Commits · 7f281206fe7e6694cc6d73afeeb0ba3eaaac9cd6 · Sciencebeam / Sciencebeam Gym

Jan 21, 2020

Bump pytest from 5.3.2 to 5.3.4 (#189) · 7f281206

dependabot-preview[bot] authored 5 years ago

Bumps [pytest](https://github.com/pytest-dev/pytest) from 5.3.2 to 5.3.4.
- [Release notes](https://github.com/pytest-dev/pytest/releases)
- [Changelog](https://github.com/pytest-dev/pytest/blob/master/CHANGELOG.rst)
- [Commits](https://github.com/pytest-dev/pytest/compare/5.3.2...5.3.4

)

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7f281206

Jan 17, 2020

Bump gunicorn from 19.9.0 to 20.0.4 (#174) · 09e10781

dependabot-preview[bot] authored 5 years ago

Bumps [gunicorn](https://github.com/benoitc/gunicorn) from 19.9.0 to 20.0.4.
- [Release notes](https://github.com/benoitc/gunicorn/releases)
- [Commits](https://github.com/benoitc/gunicorn/compare/19.9.0...20.0.4

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09e10781

Bump tqdm from 4.36.1 to 4.41.1 (#180) · ffdbf0f7

dependabot-preview[bot] authored 5 years ago

Bumps [tqdm](https://github.com/tqdm/tqdm) from 4.36.1 to 4.41.1.
- [Release notes](https://github.com/tqdm/tqdm/releases)
- [Commits](https://github.com/tqdm/tqdm/compare/v4.36.1...v4.41.1

)

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ffdbf0f7

Bump lxml from 4.4.1 to 4.4.2 (#171) · fd03b659

dependabot-preview[bot] authored 5 years ago

Bumps [lxml](https://github.com/lxml/lxml) from 4.4.1 to 4.4.2.
- [Release notes](https://github.com/lxml/lxml/releases)
- [Changelog](https://github.com/lxml/lxml/blob/master/CHANGES.txt)
- [Commits](https://github.com/lxml/lxml/compare/lxml-4.4.1...lxml-4.4.2

)

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fd03b659

Bump tensorflow-transform from 0.14.0 to 0.15.0 (#158) · fc743bd4

dependabot-preview[bot] authored 5 years ago

Bumps [tensorflow-transform](https://github.com/tensorflow/transform) from 0.14.0 to 0.15.0.
- [Release notes](https://github.com/tensorflow/transform/releases)
- [Changelog](https://github.com/tensorflow/transform/blob/master/RELEASE.md)
- [Commits](https://github.com/tensorflow/transform/compare/v0.14.0...v0.15.0

)

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fc743bd4

Bump six from 1.12.0 to 1.14.0 (#184) · 33152bcc

dependabot-preview[bot] authored 5 years ago

Bumps [six](https://github.com/benjaminp/six) from 1.12.0 to 1.14.0.
- [Release notes](https://github.com/benjaminp/six/releases)
- [Changelog](https://github.com/benjaminp/six/blob/master/CHANGES)
- [Commits](https://github.com/benjaminp/six/compare/1.12.0...1.14.0

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33152bcc

added explicit pip dependency (#185) · b84ae45a
Daniel Ecer authored 5 years ago

b84ae45a

Bump pylint from 2.3.1 to 2.4.4 (#166) · 2e827e42

dependabot-preview[bot] authored 5 years ago

* Bump pylint from 2.3.1 to 2.4.4

Bumps [pylint](https://github.com/PyCQA/pylint) from 2.3.1 to 2.4.4.
- [Release notes](https://github.com/PyCQA/pylint/releases)
- [Changelog](https://github.com/PyCQA/pylint/blob/master/ChangeLog)
- [Commits](https://github.com/PyCQA/pylint/compare/pylint-2.3.1...pylint-2.4.4

)

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* removed explicit astroid dependency

* linting

* more flake8 linting

* explicit pylint dependency

Co-authored-by: Daniel Ecer <de-code@users.noreply.github.com>

2e827e42

Bump flake8 from 3.7.8 to 3.7.9 (#160) · 8ed8e94d

dependabot-preview[bot] authored 5 years ago

Bumps [flake8](https://gitlab.com/pycqa/flake8) from 3.7.8 to 3.7.9.
- [Release notes](https://gitlab.com/pycqa/flake8/tags)
- [Commits](https://gitlab.com/pycqa/flake8/compare/3.7.8...3.7.9

)

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8ed8e94d

Bump pytest from 5.1.2 to 5.3.2 (#178) · b2ec9b0d

dependabot-preview[bot] authored 5 years ago

Bumps [pytest](https://github.com/pytest-dev/pytest) from 5.1.2 to 5.3.2.
- [Release notes](https://github.com/pytest-dev/pytest/releases)
- [Changelog](https://github.com/pytest-dev/pytest/blob/master/CHANGELOG.rst)
- [Commits](https://github.com/pytest-dev/pytest/compare/5.1.2...5.3.2

)

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b2ec9b0d

Jan 07, 2020

Bump tensorflow from 1.14.0 to 1.15.0 (#181) · ef11675d

dependabot[bot] authored 5 years ago

* Bump tensorflow from 1.14.0 to 1.15.0

Bumps [tensorflow](https://github.com/tensorflow/tensorflow) from 1.14.0 to 1.15.0.
- [Release notes](https://github.com/tensorflow/tensorflow/releases)
- [Changelog](https://github.com/tensorflow/tensorflow/blob/master/RELEASE.md)
- [Commits](https://github.com/tensorflow/tensorflow/compare/v1.14.0...v1.15.0

)

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* bumps version of docker image from 3.6.9 to 3.6.10

* upgrades pip inside docker

* fixing astroid and pylint versions to avoid false positives

Co-authored-by: LSH <lsh-0@users.noreply.github.com>

ef11675d

Sep 19, 2019

Bump tqdm from 4.35.0 to 4.36.1 (#148) · 22f1faf7

dependabot-preview[bot] authored 5 years ago

Bumps [tqdm](https://github.com/tqdm/tqdm) from 4.35.0 to 4.36.1.
- [Release notes](https://github.com/tqdm/tqdm/releases)
- [Commits](https://github.com/tqdm/tqdm/compare/v4.35.0...v4.36.1

)

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22f1faf7

Sep 09, 2019
- updated readme with python 3 (#146) · b40383a9
  Daniel Ecer authored 5 years ago
  
  v0.1.0
  
  b40383a9
- switched to python3 (#145) · b3473e4c
  Daniel Ecer authored 5 years ago
```
* ugraded to python 3

* upgrade pylint and pytest

* replaced StandardError

* exclude useless-object-inheritance

* python3 compatibilities uncovered by linting

* fixed tests

* fixed more python3 test incompatibilities
```
  b3473e4c
- normaize apos (#144) · d564a66c
  Daniel Ecer authored 5 years ago
  
  v0.0.1
  
  d564a66c
Aug 30, 2019

Bump numpy from 1.16.4 to 1.16.5 (#143) · 9c920baa

dependabot-preview[bot] authored 5 years ago

Bumps [numpy](https://github.com/numpy/numpy) from 1.16.4 to 1.16.5.
- [Release notes](https://github.com/numpy/numpy/releases)
- [Changelog](https://github.com/numpy/numpy/blob/master/doc/HOWTO_RELEASE.rst.txt)
- [Commits](https://github.com/numpy/numpy/compare/v1.16.4...v1.16.5

)

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9c920baa

Aug 27, 2019

make matching annotator configurable (#142) · 0d53ed91

Daniel Ecer authored 5 years ago

* refactored dev make targets

* added MatchingAnnotatorConfig

* extracted ratio constants

* added get_simple_fuzzy_match_filter

0d53ed91

Bump sciencebeam-alignment from 0.0.3 to 0.0.4 (#141) · 02833a88

dependabot-preview[bot] authored 5 years ago

Bumps [sciencebeam-alignment](https://github.com/elifesciences/sciencebeam-alignment) from 0.0.3 to 0.0.4.
- [Release notes](https://github.com/elifesciences/sciencebeam-alignment/releases)
- [Commits](https://github.com/elifesciences/sciencebeam-alignment/compare/v0.0.3...v0.0.4

)

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02833a88

Bump tqdm from 4.34.0 to 4.35.0 (#140) · 09f3ee70

dependabot-preview[bot] authored 5 years ago

Bumps [tqdm](https://github.com/tqdm/tqdm) from 4.34.0 to 4.35.0.
- [Release notes](https://github.com/tqdm/tqdm/releases)
- [Commits](https://github.com/tqdm/tqdm/compare/v4.34.0...v4.35.0

)

Signed-off-by: dependabot-preview[bot] <support@dependabot.com>

09f3ee70

Aug 23, 2019

Bump sciencebeam-alignment from 0.0.2 to 0.0.3 (#139) · a94deda6

dependabot-preview[bot] authored 5 years ago

Bumps [sciencebeam-alignment](https://github.com/elifesciences/sciencebeam-alignment) from 0.0.2 to 0.0.3.
- [Release notes](https://github.com/elifesciences/sciencebeam-alignment/releases)
- [Commits](https://github.com/elifesciences/sciencebeam-alignment/compare/v0.0.2...v0.0.3

)

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a94deda6

Bump apache-beam from 2.14.0 to 2.15.0 (#138) · ba718a34

dependabot-preview[bot] authored 5 years ago

Bumps [apache-beam](https://github.com/apache/beam) from 2.14.0 to 2.15.0.
- [Release notes](https://github.com/apache/beam/releases)
- [Commits](https://github.com/apache/beam/compare/v2.14.0...v2.15.0

)

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ba718a34

Aug 21, 2019

Bump sciencebeam-utils from 0.0.6 to 0.1.0 (#137) · e8cdfb6b

dependabot-preview[bot] authored 5 years ago

* Bump sciencebeam-utils from 0.0.6 to 0.1.0

Bumps [sciencebeam-utils](https://github.com/elifesciences/sciencebeam-utils) from 0.0.6 to 0.1.0.
- [Release notes](https://github.com/elifesciences/sciencebeam-utils/releases)
- [Commits](https://github.com/elifesciences/sciencebeam-utils/compare/v0.0.6...v0.1.0

)

Signed-off-by: dependabot-preview[bot] <support@dependabot.com>

* removed call to process_sciencebeam_gym_dep_args

e8cdfb6b

Bump nltk from 3.4.4 to 3.4.5 (#135) · 57cfa8a9

dependabot-preview[bot] authored 5 years ago

Bumps [nltk](https://github.com/nltk/nltk) from 3.4.4 to 3.4.5.
- [Release notes](https://github.com/nltk/nltk/releases)
- [Changelog](https://github.com/nltk/nltk/blob/develop/ChangeLog)
- [Commits](https://github.com/nltk/nltk/compare/3.4.4...3.4.5

)

Signed-off-by: dependabot-preview[bot] <support@dependabot.com>

57cfa8a9

Bump pytest from 4.6.2 to 4.6.5 (#136) · 252fa207

dependabot-preview[bot] authored 5 years ago

Bumps [pytest](https://github.com/pytest-dev/pytest) from 4.6.2 to 4.6.5.
- [Release notes](https://github.com/pytest-dev/pytest/releases)
- [Changelog](https://github.com/pytest-dev/pytest/blob/master/CHANGELOG.rst)
- [Commits](https://github.com/pytest-dev/pytest/compare/4.6.2...4.6.5

)

Signed-off-by: dependabot-preview[bot] <support@dependabot.com>

252fa207

Aug 20, 2019

Bump tensorflow-transform from 0.13.0 to 0.14.0 (#130) · f201765e

dependabot-preview[bot] authored 5 years ago

Bumps [tensorflow-transform](https://github.com/tensorflow/transform) from 0.13.0 to 0.14.0.
- [Release notes](https://github.com/tensorflow/transform/releases)
- [Changelog](https://github.com/tensorflow/transform/blob/master/RELEASE.md)
- [Commits](https://github.com/tensorflow/transform/compare/v0.13.0...v0.14.0

)

Signed-off-by: dependabot-preview[bot] <support@dependabot.com>

f201765e

Bump lxml from 4.4.0 to 4.4.1 (#132) · 16835231

dependabot-preview[bot] authored 5 years ago

Bumps [lxml](https://github.com/lxml/lxml) from 4.4.0 to 4.4.1.
- [Release notes](https://github.com/lxml/lxml/releases)
- [Changelog](https://github.com/lxml/lxml/blob/master/CHANGES.txt)
- [Commits](https://github.com/lxml/lxml/compare/lxml-4.4.0...lxml-4.4.1

)

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16835231

Bump tqdm from 4.32.2 to 4.34.0 (#134) · 9e0561d3

dependabot-preview[bot] authored 5 years ago

Bumps [tqdm](https://github.com/tqdm/tqdm) from 4.32.2 to 4.34.0.
- [Release notes](https://github.com/tqdm/tqdm/releases)
- [Commits](https://github.com/tqdm/tqdm/compare/v4.32.2...v4.34.0

)

Signed-off-by: dependabot-preview[bot] <support@dependabot.com>

9e0561d3

Aug 05, 2019

Bump tensorflow from 1.13.1 to 1.14.0 (#118) · 38708b9d

dependabot-preview[bot] authored 5 years ago

Bumps [tensorflow](https://github.com/tensorflow/tensorflow) from 1.13.1 to 1.14.0.
- [Release notes](https://github.com/tensorflow/tensorflow/releases)
- [Changelog](https://github.com/tensorflow/tensorflow/blob/v1.14.0/RELEASE.md)
- [Commits](https://github.com/tensorflow/tensorflow/compare/v1.13.1...v1.14.0

)

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38708b9d

Bump nltk from 3.4.3 to 3.4.4 (#121) · be763c48

dependabot-preview[bot] authored 5 years ago

Bumps [nltk](https://github.com/nltk/nltk) from 3.4.3 to 3.4.4.
- [Release notes](https://github.com/nltk/nltk/releases)
- [Changelog](https://github.com/nltk/nltk/blob/develop/ChangeLog)
- [Commits](https://github.com/nltk/nltk/commits

)

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be763c48

Bump tqdm from 4.32.1 to 4.32.2 (#119) · a086f143

dependabot-preview[bot] authored 5 years ago

Bumps [tqdm](https://github.com/tqdm/tqdm) from 4.32.1 to 4.32.2.
- [Release notes](https://github.com/tqdm/tqdm/releases)
- [Commits](https://github.com/tqdm/tqdm/compare/v4.32.1...v4.32.2

)

Signed-off-by: dependabot-preview[bot] <support@dependabot.com>

a086f143

Bump flask from 1.0.3 to 1.1.1 (#124) · 231956b3

dependabot-preview[bot] authored 5 years ago

Bumps [flask](https://github.com/pallets/flask) from 1.0.3 to 1.1.1.
- [Release notes](https://github.com/pallets/flask/releases)
- [Changelog](https://github.com/pallets/flask/blob/master/CHANGES.rst)
- [Commits](https://github.com/pallets/flask/compare/1.0.3...1.1.1

)

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231956b3

Bump flake8 from 3.7.7 to 3.7.8 (#125) · 4761151d

dependabot-preview[bot] authored 5 years ago

Bumps [flake8](https://gitlab.com/pycqa/flake8) from 3.7.7 to 3.7.8.
- [Release notes](https://gitlab.com/pycqa/flake8/tags)
- [Commits](https://gitlab.com/pycqa/flake8/compare/3.7.7...3.7.8

)

Signed-off-by: dependabot-preview[bot] <support@dependabot.com>

4761151d

Bump lxml from 4.3.4 to 4.4.0 (#126) · 550d6d77

dependabot-preview[bot] authored 5 years ago

Bumps [lxml](https://github.com/lxml/lxml) from 4.3.4 to 4.4.0.
- [Release notes](https://github.com/lxml/lxml/releases)
- [Changelog](https://github.com/lxml/lxml/blob/master/CHANGES.txt)
- [Commits](https://github.com/lxml/lxml/compare/lxml-4.3.4...lxml-4.4.0

)

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550d6d77

Bump apache-beam from 2.13.0 to 2.14.0 (#128) · 373a6e20

dependabot-preview[bot] authored 5 years ago

Bumps [apache-beam](https://github.com/apache/beam) from 2.13.0 to 2.14.0.
- [Release notes](https://github.com/apache/beam/releases)
- [Commits](https://github.com/apache/beam/compare/v2.13.0...v2.14.0

)

Signed-off-by: dependabot-preview[bot] <support@dependabot.com>

373a6e20

Bump sciencebeam-utils from 0.0.5 to 0.0.6 (#129) · e4ff3583

dependabot-preview[bot] authored 5 years ago

Bumps [sciencebeam-utils](https://github.com/elifesciences/sciencebeam-utils) from 0.0.5 to 0.0.6.
- [Release notes](https://github.com/elifesciences/sciencebeam-utils/releases)
- [Commits](https://github.com/elifesciences/sciencebeam-utils/compare/v0.0.5...v0.0.6

)

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e4ff3583

Jun 10, 2019

minor model training logging improvement (#116) · 40ff4128

Daniel Ecer authored 5 years ago

* minor model training logging improvement

* make port configurable

* added autocut-start-cloud

40ff4128

added start-autocut.sh script (#115) · db96e9e6
Daniel Ecer authored 5 years ago

db96e9e6

Bump nltk from 3.4.1 to 3.4.3 (#113) · 35b1470a

dependabot-preview[bot] authored 5 years ago

Bumps [nltk](https://github.com/nltk/nltk) from 3.4.1 to 3.4.3.
- [Release notes](https://github.com/nltk/nltk/releases)
- [Changelog](https://github.com/nltk/nltk/blob/develop/ChangeLog)
- [Commits](https://github.com/nltk/nltk/compare/3.4.1...3.4.3

)

Signed-off-by: dependabot-preview[bot] <support@dependabot.com>

35b1470a

Bump lxml from 4.3.3 to 4.3.4 (#114) · c01e5a42

dependabot-preview[bot] authored 5 years ago

Bumps [lxml](https://github.com/lxml/lxml) from 4.3.3 to 4.3.4.
- [Release notes](https://github.com/lxml/lxml/releases)
- [Changelog](https://github.com/lxml/lxml/blob/master/CHANGES.txt)
- [Commits](https://github.com/lxml/lxml/compare/lxml-4.3.3...lxml-4.3.4

)

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c01e5a42

Jun 05, 2019

push unstable image (#111) · 22fe6d10

Daniel Ecer authored 5 years ago

* move checkout and move to master into containers node

* use elifePipeline

* push unstable image

22fe6d10