Bumps [lxml](https://github.com/lxml/lxml) from 4.4.2 to 4.5.0.
- [Release notes](https://github.com/lxml/lxml/releases)
- [Changelog](https://github.com/lxml/lxml/blob/master/CHANGES.txt)
- [Commits](https://github.com/lxml/lxml/compare/lxml-4.4.2...lxml-4.5.0

)

Signed-off-by: dependabot-preview[bot] <support@dependabot.com>

Bumps [matplotlib](https://github.com/matplotlib/matplotlib) from 2.2.4 to 2.2.5.
- [Release notes](https://github.com/matplotlib/matplotlib/releases)
- [Commits](https://github.com/matplotlib/matplotlib/compare/v2.2.4...v2.2.5

)

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Bumps [tqdm](https://github.com/tqdm/tqdm) from 4.41.1 to 4.42.1.
- [Release notes](https://github.com/tqdm/tqdm/releases)
- [Commits](https://github.com/tqdm/tqdm/compare/v4.41.1...v4.42.1

)

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Bumps [fuzzywuzzy](https://github.com/seatgeek/fuzzywuzzy) from 0.17.0 to 0.18.0.
- [Release notes](https://github.com/seatgeek/fuzzywuzzy/releases)
- [Changelog](https://github.com/seatgeek/fuzzywuzzy/blob/master/CHANGES.rst)
- [Commits](https://github.com/seatgeek/fuzzywuzzy/compare/0.17.0...0.18.0

)

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Bumps [pip](https://github.com/pypa/pip) from 19.3.1 to 20.0.2.
- [Release notes](https://github.com/pypa/pip/releases)
- [Changelog](https://github.com/pypa/pip/blob/master/NEWS.rst)
- [Commits](https://github.com/pypa/pip/compare/19.3.1...20.0.2

)

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Bumps [pytest](https://github.com/pytest-dev/pytest) from 5.3.4 to 5.3.5.
- [Release notes](https://github.com/pytest-dev/pytest/releases)
- [Changelog](https://github.com/pytest-dev/pytest/blob/master/CHANGELOG.rst)
- [Commits](https://github.com/pytest-dev/pytest/compare/5.3.4...5.3.5

)

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Bumps [apache-beam[gcp]](https://github.com/apache/beam) from 2.15.0 to 2.18.0.
- [Release notes](https://github.com/apache/beam/releases)
- [Changelog](https://github.com/apache/beam/blob/master/CHANGES.md)
- [Commits](https://github.com/apache/beam/compare/v2.15.0...v2.18.0

)

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Bumps [tensorflow](https://github.com/tensorflow/tensorflow) from 1.15.0 to 1.15.2.
- [Release notes](https://github.com/tensorflow/tensorflow/releases)
- [Changelog](https://github.com/tensorflow/tensorflow/blob/v1.15.2/RELEASE.md)
- [Commits](https://github.com/tensorflow/tensorflow/compare/v1.15.0...v1.15.2

)

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Bumps [tensorflow-transform](https://github.com/tensorflow/transform) from 0.15.0 to 0.21.0.
- [Release notes](https://github.com/tensorflow/transform/releases)
- [Changelog](https://github.com/tensorflow/transform/blob/master/RELEASE.md)
- [Commits](https://github.com/tensorflow/transform/compare/v0.15.0...v0.21.0

)

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Bumps [numpy](https://github.com/numpy/numpy) from 1.16.5 to 1.18.1.
- [Release notes](https://github.com/numpy/numpy/releases)
- [Changelog](https://github.com/numpy/numpy/blob/master/doc/HOWTO_RELEASE.rst.txt)
- [Commits](https://github.com/numpy/numpy/compare/v1.16.5...v1.18.1

)

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Bumps [pytest](https://github.com/pytest-dev/pytest) from 5.3.2 to 5.3.4.
- [Release notes](https://github.com/pytest-dev/pytest/releases)
- [Changelog](https://github.com/pytest-dev/pytest/blob/master/CHANGELOG.rst)
- [Commits](https://github.com/pytest-dev/pytest/compare/5.3.2...5.3.4

)

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Bumps [gunicorn](https://github.com/benoitc/gunicorn) from 19.9.0 to 20.0.4.
- [Release notes](https://github.com/benoitc/gunicorn/releases)
- [Commits](https://github.com/benoitc/gunicorn/compare/19.9.0...20.0.4

)

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Bumps [tqdm](https://github.com/tqdm/tqdm) from 4.36.1 to 4.41.1.
- [Release notes](https://github.com/tqdm/tqdm/releases)
- [Commits](https://github.com/tqdm/tqdm/compare/v4.36.1...v4.41.1

)

Signed-off-by: dependabot-preview[bot] <support@dependabot.com>

Bumps [lxml](https://github.com/lxml/lxml) from 4.4.1 to 4.4.2.
- [Release notes](https://github.com/lxml/lxml/releases)
- [Changelog](https://github.com/lxml/lxml/blob/master/CHANGES.txt)
- [Commits](https://github.com/lxml/lxml/compare/lxml-4.4.1...lxml-4.4.2

)

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Bumps [tensorflow-transform](https://github.com/tensorflow/transform) from 0.14.0 to 0.15.0.
- [Release notes](https://github.com/tensorflow/transform/releases)
- [Changelog](https://github.com/tensorflow/transform/blob/master/RELEASE.md)
- [Commits](https://github.com/tensorflow/transform/compare/v0.14.0...v0.15.0

)

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Bumps [six](https://github.com/benjaminp/six) from 1.12.0 to 1.14.0.
- [Release notes](https://github.com/benjaminp/six/releases)
- [Changelog](https://github.com/benjaminp/six/blob/master/CHANGES)
- [Commits](https://github.com/benjaminp/six/compare/1.12.0...1.14.0

)

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* Bump pylint from 2.3.1 to 2.4.4

Bumps [pylint](https://github.com/PyCQA/pylint) from 2.3.1 to 2.4.4.
- [Release notes](https://github.com/PyCQA/pylint/releases)
- [Changelog](https://github.com/PyCQA/pylint/blob/master/ChangeLog)
- [Commits](https://github.com/PyCQA/pylint/compare/pylint-2.3.1...pylint-2.4.4

)

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* removed explicit astroid dependency

* linting

* more flake8 linting

* explicit pylint dependency

Co-authored-by: Daniel Ecer <de-code@users.noreply.github.com>

Bumps [flake8](https://gitlab.com/pycqa/flake8) from 3.7.8 to 3.7.9.
- [Release notes](https://gitlab.com/pycqa/flake8/tags)
- [Commits](https://gitlab.com/pycqa/flake8/compare/3.7.8...3.7.9

)

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Bumps [pytest](https://github.com/pytest-dev/pytest) from 5.1.2 to 5.3.2.
- [Release notes](https://github.com/pytest-dev/pytest/releases)
- [Changelog](https://github.com/pytest-dev/pytest/blob/master/CHANGELOG.rst)
- [Commits](https://github.com/pytest-dev/pytest/compare/5.1.2...5.3.2

)

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* Bump tensorflow from 1.14.0 to 1.15.0

Bumps [tensorflow](https://github.com/tensorflow/tensorflow) from 1.14.0 to 1.15.0.
- [Release notes](https://github.com/tensorflow/tensorflow/releases)
- [Changelog](https://github.com/tensorflow/tensorflow/blob/master/RELEASE.md)
- [Commits](https://github.com/tensorflow/tensorflow/compare/v1.14.0...v1.15.0

)

Signed-off-by: dependabot[bot] <support@github.com>

* bumps version of docker image from 3.6.9 to 3.6.10

* upgrades pip inside docker

* fixing astroid and pylint versions to avoid false positives

Co-authored-by: LSH <lsh-0@users.noreply.github.com>

Bumps [tqdm](https://github.com/tqdm/tqdm) from 4.35.0 to 4.36.1.
- [Release notes](https://github.com/tqdm/tqdm/releases)
- [Commits](https://github.com/tqdm/tqdm/compare/v4.35.0...v4.36.1

)

Signed-off-by: dependabot-preview[bot] <support@dependabot.com>

* ugraded to python 3

* upgrade pylint and pytest

* replaced StandardError

* exclude useless-object-inheritance

* python3 compatibilities uncovered by linting

* fixed tests

* fixed more python3 test incompatibilities

Bumps [numpy](https://github.com/numpy/numpy) from 1.16.4 to 1.16.5.
- [Release notes](https://github.com/numpy/numpy/releases)
- [Changelog](https://github.com/numpy/numpy/blob/master/doc/HOWTO_RELEASE.rst.txt)
- [Commits](https://github.com/numpy/numpy/compare/v1.16.4...v1.16.5

)

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* refactored dev make targets

* added MatchingAnnotatorConfig

* extracted ratio constants

* added get_simple_fuzzy_match_filter

Bumps [sciencebeam-alignment](https://github.com/elifesciences/sciencebeam-alignment) from 0.0.3 to 0.0.4.
- [Release notes](https://github.com/elifesciences/sciencebeam-alignment/releases)
- [Commits](https://github.com/elifesciences/sciencebeam-alignment/compare/v0.0.3...v0.0.4

)

Signed-off-by: dependabot-preview[bot] <support@dependabot.com>

Bumps [tqdm](https://github.com/tqdm/tqdm) from 4.34.0 to 4.35.0.
- [Release notes](https://github.com/tqdm/tqdm/releases)
- [Commits](https://github.com/tqdm/tqdm/compare/v4.34.0...v4.35.0

)

Signed-off-by: dependabot-preview[bot] <support@dependabot.com>

Bumps [sciencebeam-alignment](https://github.com/elifesciences/sciencebeam-alignment) from 0.0.2 to 0.0.3.
- [Release notes](https://github.com/elifesciences/sciencebeam-alignment/releases)
- [Commits](https://github.com/elifesciences/sciencebeam-alignment/compare/v0.0.2...v0.0.3

)

Signed-off-by: dependabot-preview[bot] <support@dependabot.com>

Bumps [apache-beam](https://github.com/apache/beam) from 2.14.0 to 2.15.0.
- [Release notes](https://github.com/apache/beam/releases)
- [Commits](https://github.com/apache/beam/compare/v2.14.0...v2.15.0

)

Signed-off-by: dependabot-preview[bot] <support@dependabot.com>

* Bump sciencebeam-utils from 0.0.6 to 0.1.0

Bumps [sciencebeam-utils](https://github.com/elifesciences/sciencebeam-utils) from 0.0.6 to 0.1.0.
- [Release notes](https://github.com/elifesciences/sciencebeam-utils/releases)
- [Commits](https://github.com/elifesciences/sciencebeam-utils/compare/v0.0.6...v0.1.0

)

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* removed call to process_sciencebeam_gym_dep_args

Bumps [nltk](https://github.com/nltk/nltk) from 3.4.4 to 3.4.5.
- [Release notes](https://github.com/nltk/nltk/releases)
- [Changelog](https://github.com/nltk/nltk/blob/develop/ChangeLog)
- [Commits](https://github.com/nltk/nltk/compare/3.4.4...3.4.5

)

Signed-off-by: dependabot-preview[bot] <support@dependabot.com>

Bumps [pytest](https://github.com/pytest-dev/pytest) from 4.6.2 to 4.6.5.
- [Release notes](https://github.com/pytest-dev/pytest/releases)
- [Changelog](https://github.com/pytest-dev/pytest/blob/master/CHANGELOG.rst)
- [Commits](https://github.com/pytest-dev/pytest/compare/4.6.2...4.6.5

)

Signed-off-by: dependabot-preview[bot] <support@dependabot.com>