xpub-epmc issueshttps://gitlab.coko.foundation/xpub/xpub-epmc/-/issues2020-01-23T16:42:39Zhttps://gitlab.coko.foundation/xpub/xpub-epmc/-/issues/939Keywords2020-01-23T16:42:39ZPetra Smith JeglikovaKeywordsIncorrect “Keywords” heading in web preview. There are two types of keywords, one type in English and the other in German. The in German is only displayed in pdf view, and web preview the German “Schlagwörter” is missing and English 'key...Incorrect “Keywords” heading in web preview. There are two types of keywords, one type in English and the other in German. The in German is only displayed in pdf view, and web preview the German “Schlagwörter” is missing and English 'keywords' displayed instead. ![Screenshot_2020-01-09_at_12.05.06](/uploads/ebb6e24bdba14abd9efd5b85cd9d865a/Screenshot_2020-01-09_at_12.05.06.png)
![Screenshot_2020-01-09_at_13.50.32](/uploads/06ca96050331d946d787fff1abed9da3/Screenshot_2020-01-09_at_13.50.32.png)
![Screenshot_2020-01-09_at_12.04.43](/uploads/96b80bd333d7146f66cb9ff111a515e0/Screenshot_2020-01-09_at_12.04.43.png)
https://plus.europepmc.org/submission/EMS85373/reviewWork package 19Audrey HamelersAudrey Hamelershttps://gitlab.coko.foundation/xpub/xpub-epmc/-/issues/927When reparsed after error, manuscript doesn't get assigned for Helpdesk exter...2020-01-23T16:31:09ZPetra Smith JeglikovaWhen reparsed after error, manuscript doesn't get assigned for Helpdesk external QA despite SNSF funded.After error occurs while generating web and pdf preview after tagging, and then reparsed after the error, manuscript doesn't get assigned for Helpdesk external QA despite SNSF funded. EMS84726After error occurs while generating web and pdf preview after tagging, and then reparsed after the error, manuscript doesn't get assigned for Helpdesk external QA despite SNSF funded. EMS84726Audrey HamelersAudrey Hamelershttps://gitlab.coko.foundation/xpub/xpub-epmc/-/issues/944Nature new bulk uploads2020-01-23T16:29:51ZFrances RogersNature new bulk uploadsHello,
Nature are trying to send their bulk upload packages to us in a way that will be more helpful for us. There are two test packages that are currently failing to load to the beta FTP site. There are no helpful error logs.
Does any...Hello,
Nature are trying to send their bulk upload packages to us in a way that will be more helpful for us. There are two test packages that are currently failing to load to the beta FTP site. There are no helpful error logs.
Does anyone know why?
Is the beta FTP an accurate enough version for us to test this with?
I started this with Rakesh but am now throwing this at Koosum but unsure of who else would be able to help!
Thanks,
FranKoosum Y RoochunKoosum Y Roochunhttps://gitlab.coko.foundation/xpub/xpub-epmc/-/issues/945Delete & add grants not working when adding citation information2020-01-23T16:22:48ZAudrey HamelersDelete & add grants not working when adding citation informationAs an admin when adding the citation information & the article is "Already in PMC", if you click "Remove submission", it is supposed to add the citation information then remove the submission. Instead, the citation information is added, ...As an admin when adding the citation information & the article is "Already in PMC", if you click "Remove submission", it is supposed to add the citation information then remove the submission. Instead, the citation information is added, but the manuscript is not deleted until you go through the whole process and click the "Remove submission" button a second time.
Probably related to #920Work package 19Audrey HamelersAudrey Hamelershttps://gitlab.coko.foundation/xpub/xpub-epmc/-/issues/946PDF generation file size limit needs to be increased (TIFF).2020-01-23T16:22:46ZDavid StephensonPDF generation file size limit needs to be increased (TIFF).The current allowed maximum file size in plus for TIFFs appears to 19mb. The files that do fail this check are often between 19-21mb so a small increase would stop a lot of errors.
e.g. this file is 19.3mb (EMS85521)
![image](/uploads/...The current allowed maximum file size in plus for TIFFs appears to 19mb. The files that do fail this check are often between 19-21mb so a small increase would stop a lot of errors.
e.g. this file is 19.3mb (EMS85521)
![image](/uploads/45adcb563596ef4cd8cc46f708c7ea0c/image.png)
Please increase the limit to 24mb (as per this slack conversation: https://europepmc.slack.com/archives/C0PFLUZU3/p1579788721030400).Work package 19Audrey HamelersAudrey Hamelershttps://gitlab.coko.foundation/xpub/xpub-epmc/-/issues/942Space is not appearing in <contrib contrib-type="editor"> between “Reviewed b...2020-01-23T15:57:09ZPetra Smith JeglikovaSpace is not appearing in <contrib contrib-type="editor"> between “Reviewed by” and “name of author” in web previewSpace is not appearing in <contrib contrib-type="editor"> between “Reviewed by” and “name of author” in web preview in EMS85367
![Screenshot_2020-01-10_at_11.03.47](/uploads/a6be0134e9b49510652592ca549874ab/Screenshot_2020-01-10_at_11.0...Space is not appearing in <contrib contrib-type="editor"> between “Reviewed by” and “name of author” in web preview in EMS85367
![Screenshot_2020-01-10_at_11.03.47](/uploads/a6be0134e9b49510652592ca549874ab/Screenshot_2020-01-10_at_11.03.47.png)
![Screenshot_2020-01-10_at_11.05.15](/uploads/e56f015cf8f31e7bd90eff1d1b3c053f/Screenshot_2020-01-10_at_11.05.15.png)Work package 19Audrey HamelersAudrey Hamelershttps://gitlab.coko.foundation/xpub/xpub-epmc/-/issues/937Table footnote labels not displaying in web preview2020-01-23T15:57:03ZFrances RogersTable footnote labels not displaying in web previewThis may have been an unfortunate side effect of our tinkering as I am sure these used to show? Anyway, now <label> does not show on web preview when in the table footnote.
https://plus.europepmc.org/submission/EMS85288/review
![Scree...This may have been an unfortunate side effect of our tinkering as I am sure these used to show? Anyway, now <label> does not show on web preview when in the table footnote.
https://plus.europepmc.org/submission/EMS85288/review
![Screenshot_2020-01-02_14.05.13](/uploads/e4d89ce45f2a1bb00a9e6d43d78e1712/Screenshot_2020-01-02_14.05.13.png)
![Screenshot_2020-01-02_14.05.35](/uploads/fe2546925c93dd065b73a8b5a5f5dbea/Screenshot_2020-01-02_14.05.35.png)Work package 19Audrey HamelersAudrey Hamelershttps://gitlab.coko.foundation/xpub/xpub-epmc/-/issues/938<label> not displaying in simple lists2020-01-23T15:57:01ZFrances Rogers<label> not displaying in simple listshttps://plus.europepmc.org/submission/EMS85095/review
Sorry Audrey, it appears that <label> within lists is also not displaying
![Screenshot_2020-01-09_11.15.41](/uploads/67343a0a9af9a07db06de389b4befb2f/Screenshot_2020-01-09_11.15.41...https://plus.europepmc.org/submission/EMS85095/review
Sorry Audrey, it appears that <label> within lists is also not displaying
![Screenshot_2020-01-09_11.15.41](/uploads/67343a0a9af9a07db06de389b4befb2f/Screenshot_2020-01-09_11.15.41.png)
![Screenshot_2020-01-09_11.15.54](/uploads/88ec774350b66e8b44aedb45846b1cbd/Screenshot_2020-01-09_11.15.54.png)Work package 19Audrey HamelersAudrey Hamelershttps://gitlab.coko.foundation/xpub/xpub-epmc/-/issues/918F1000 web preview problems2020-01-23T15:56:55ZFrances RogersF1000 web preview problemsHi Audrey, are these things we need to fix for F1000 articles, or should they be fine once they reach PMC?
Examples so far: https://plus.europepmc.org/submission/EMS84056/review
https://plus.europepmc.org/submission/EMS83219/review
Ref...Hi Audrey, are these things we need to fix for F1000 articles, or should they be fine once they reach PMC?
Examples so far: https://plus.europepmc.org/submission/EMS84056/review
https://plus.europepmc.org/submission/EMS83219/review
Reference lists are not displaying:
![Screenshot_2019-09-06_14.37.32](/uploads/739744583c8bcb4250f93bdb85ac13d5/Screenshot_2019-09-06_14.37.32.png)
The reviewer affils are displaying in the author section:
![Screenshot_2019-09-06_14.38.22](/uploads/d74ee56bd54db03da1af0a83a4f6767b/Screenshot_2019-09-06_14.38.22.png)
![Screenshot_2019-09-06_14.39.02](/uploads/476f00ef112261538adee528b53c7a52/Screenshot_2019-09-06_14.39.02.png)Work package 19Audrey HamelersAudrey Hamelershttps://gitlab.coko.foundation/xpub/xpub-epmc/-/issues/943Cannot edit reviewer from activity page with no grants2020-01-23T15:56:53ZAudrey HamelersCannot edit reviewer from activity page with no grantsSeems to be a bug for the activity page only.Seems to be a bug for the activity page only.Work package 19Audrey HamelersAudrey Hamelershttps://gitlab.coko.foundation/xpub/xpub-epmc/-/issues/920Duplicate article email sent to submitter 3 times when article already in PMC2020-01-23T11:32:03ZAudrey HamelersDuplicate article email sent to submitter 3 times when article already in PMCWhen an manuscript with grants is deleted as "already in PMC" from the activity page, by matching with an "Already in PMC" citation, the email is sent 3 times to the user and 3 sets of the grant information are created on the FTP.When an manuscript with grants is deleted as "already in PMC" from the activity page, by matching with an "Already in PMC" citation, the email is sent 3 times to the user and 3 sets of the grant information are created on the FTP.Work Package 18Audrey HamelersAudrey Hamelershttps://gitlab.coko.foundation/xpub/xpub-epmc/-/issues/941Text displayed in web preview but missing in pdf2020-01-10T10:59:51ZPetra Smith JeglikovaText displayed in web preview but missing in pdfText 'https://www.medicines.org.uk/emc/product/5566/smpc' displayed in web preview but missing in pdf in EMS85323
<ref id="R45">
<label>45</label>
<note>
<p>Glivec 400mg film-coated t...Text 'https://www.medicines.org.uk/emc/product/5566/smpc' displayed in web preview but missing in pdf in EMS85323
<ref id="R45">
<label>45</label>
<note>
<p>Glivec 400mg film-coated tablets https://www.medicines.org.uk/emc/product/5566/smpc </p>
</note>
</ref>
![Screenshot_2020-01-10_at_10.02.36](/uploads/4c6e024728dea4c91022d464bbdb583f/Screenshot_2020-01-10_at_10.02.36.png)
![Screenshot_2020-01-10_at_10.02.02](/uploads/b8794a81714b19c528b888005ab46df3/Screenshot_2020-01-10_at_10.02.02.png)Work package 19Audrey HamelersAudrey Hamelershttps://gitlab.coko.foundation/xpub/xpub-epmc/-/issues/799XSweet - Headings displaying improperly2020-01-09T16:14:26ZLynne FaulkXSweet - Headings displaying improperlyNot sure if there's anything we can do about this, but when a user uploaded a manuscript in MS Word, the headings levels did not display as expected in the previewer, which was of concern to the user, and s/he was hesitant to approve it.Not sure if there's anything we can do about this, but when a user uploaded a manuscript in MS Word, the headings levels did not display as expected in the previewer, which was of concern to the user, and s/he was hesitant to approve it.https://gitlab.coko.foundation/xpub/xpub-epmc/-/issues/832Grants link - There's an error in the server log related to the email id2020-01-06T10:58:15ZRakesh NambiarGrants link - There's an error in the server log related to the email idThere's an error in the server log related to the email id. I think, this a common problem in the `ftp - utilities` too.
```
2019-05-30T13:16:19.706Z - info: Email recipient: camici.paolo@hsr.it
2019-05-30T13:16:19.706Z - info: Email B...There's an error in the server log related to the email id. I think, this a common problem in the `ftp - utilities` too.
```
2019-05-30T13:16:19.706Z - info: Email recipient: camici.paolo@hsr.it
2019-05-30T13:16:19.706Z - info: Email BCC: plusadmin@ebi.ac.uk
2019-05-30T13:16:19.709Z - info: ::ffff:172.18.0.6 - - [30/May/2019:13:16:19 +0000] "POST /graphql HTTP/1.1" 200 36 "https://beta.plus.europepmc.org/submission/EMS90203/activity" "Mozilla/5.0 (Windows NT 10.0; Win64; x64; rv:66.0) Gecko/20100101 Firefox/66.0"
2019-05-30T13:16:19.718Z - error: Unhandled Rejection at: Error: User email not found
at Object.findEmail (/home/xpub/server/xpub-model/entities/user/index.js:42:13)
at <anonymous>
```Audrey HamelersAudrey Hamelershttps://gitlab.coko.foundation/xpub/xpub-epmc/-/issues/703Manage User - The privilege `tagger` doesn't have any effect2020-01-06T10:52:03ZRakesh NambiarManage User - The privilege `tagger` doesn't have any effectThe privilege `tagger` doesn't have any effect. Because the user won't create inside the ftp container or update the default tagger-name in the local-production.json file while changing the privilege.The privilege `tagger` doesn't have any effect. Because the user won't create inside the ftp container or update the default tagger-name in the local-production.json file while changing the privilege.Audrey HamelersAudrey Hamelershttps://gitlab.coko.foundation/xpub/xpub-epmc/-/issues/847Handling F1000 articles in new plus2020-01-06T09:33:41ZFrances RogersHandling F1000 articles in new plusHello Audrey,
Sorry to be a thorn in your side at the moment!
We have had three submissions including the XML from F1000:
https://plus.europepmc.org/submission/EMS83219/submit
https://plus.europepmc.org/submission/EMS83257/submit
https...Hello Audrey,
Sorry to be a thorn in your side at the moment!
We have had three submissions including the XML from F1000:
https://plus.europepmc.org/submission/EMS83219/submit
https://plus.europepmc.org/submission/EMS83257/submit
https://plus.europepmc.org/submission/EMS83218/submit
I forgot about these submissions whilst we were thinking about the new system, do you have XSLT/a new one that we can use and how can we best move them through the system?
Thanks, you are amazing!
FranWork Package 18Audrey HamelersAudrey Hamelershttps://gitlab.coko.foundation/xpub/xpub-epmc/-/issues/936Unable to use plus in Internet Explorer v. 11.4762020-01-04T10:48:52ZDavid StephensonUnable to use plus in Internet Explorer v. 11.476A user has reported not being able to use plus in IE https://helpdesk.ebi.ac.uk/Ticket/Display.html?id=385717.
When verifying, I discovered plus would not load in IE v. 11.476 at all for me (https://helpdesk.ebi.ac.uk/Ticket/Display.ht...A user has reported not being able to use plus in IE https://helpdesk.ebi.ac.uk/Ticket/Display.html?id=385717.
When verifying, I discovered plus would not load in IE v. 11.476 at all for me (https://helpdesk.ebi.ac.uk/Ticket/Display.html?id=385717.
![image](/uploads/230b1cbb3ea038455f4de1610fb762b2/image.png)
I have tried in a private window too, and have the same result.
I know IE is not a high priority, but it probably needs to at least load!Audrey HamelersAudrey Hamelershttps://gitlab.coko.foundation/xpub/xpub-epmc/-/issues/929Overdue tagging alert/icon/notification2019-12-24T14:03:20ZDavid StephensonOverdue tagging alert/icon/notificationWe recently had a problem where several manuscripts spent 1 month in "tagging" without anyone noticing. We only noticed by chance. We will now check manually more often.
HOWEVER, it might be good if there were an indicator of items bei...We recently had a problem where several manuscripts spent 1 month in "tagging" without anyone noticing. We only noticed by chance. We will now check manually more often.
HOWEVER, it might be good if there were an indicator of items being overdue or outside of the SLA for tagging, to nudge us into investigating.
Can we have one of the following (in order of preference) if tagging is overdue:
1/A visual indicator next to "tagging" or "Tagger queue" on the Dashboard screen (A red exclamation mark or a Geocities gif of flashing sirens)
2/A pop up for admin somewhere in the system
3/ An email (we will probably miss this though)Work Package 18Audrey HamelersAudrey Hamelershttps://gitlab.coko.foundation/xpub/xpub-epmc/-/issues/935Move login notifications to config2019-12-24T10:53:46ZAudrey HamelersMove login notifications to configAllow notifications to be set in config. Including special holiday notification with different dates. Holiday notification will automatically go away when end date passed.Allow notifications to be set in config. Including special holiday notification with different dates. Holiday notification will automatically go away when end date passed.Work Package 18Audrey HamelersAudrey Hamelershttps://gitlab.coko.foundation/xpub/xpub-epmc/-/issues/909Can we handle email case sensitivity better?2019-12-23T17:12:13ZFrances RogersCan we handle email case sensitivity better?We have inadvertently created a catch 22 for users that are using the correct email address but with the incorrect case.
If you try to login with the incorrect case email but the correct password you are denied with the message "You've ...We have inadvertently created a catch 22 for users that are using the correct email address but with the incorrect case.
If you try to login with the incorrect case email but the correct password you are denied with the message "You've entered an incorrect email or password":
![Screenshot_2019-08-23_10.32.48](/uploads/3e02af3c1927f6b9e80e07907e5039f0/Screenshot_2019-08-23_10.32.48.png)
If I then try to create an account with the incorrect case email I am told "Email already exists":
![Screenshot_2019-08-23_10.33.31](/uploads/255b042a5dc59a466435ba4d9c5189dc/Screenshot_2019-08-23_10.33.31.png)
So I know we want to avoid the many accounts per person of the old system, but is there a better error message we could have? Or any other way around this at all?
FranWork Package 18Audrey HamelersAudrey Hamelers