fix readme

README.md

@@ -88,8 +88,8 @@ The sequence of commands for generating and running a sample app is as follows:
 ```bash
 pubsweet new my-app-name
 cd my-app-name
-pubsweet setupdb (or npm run setupdb) 
-pubsweet start (or npm start)
+pubsweet setupdb # (or npm run setupdb) 
+pubsweet start # (or npm start)
 ```
 
 ## Using PubSweet CLI
@@ -105,7 +105,7 @@ Usage: pubsweet [options] [command]
 Commands:
 
   new         create and set up a new pubsweet app
-  start         start a pubsweet app
+  start       start a pubsweet app
   setupdb     generate a database for a pubsweet app
   add         add one or more components to a pubsweet app
   remove      remove one or more components from a pubsweet app
@@ -167,7 +167,7 @@ $ pubsweet setupdb --clobber
 info: Generating PubSweet app database at api/db/production
 info: Database already exists
 info: Overwriting existing database due to --clobber flag
-info: Aetting up the database
+info: Setting up the database
 question:><Admin username><
 [...etc]
 ```
@@ -198,7 +198,7 @@ Forever is initialised to watch for changes in the config directory by default.
 ### Adding and removing components (`pubsweet add`, `pubsweet remove`)
 
 Components add pages, actions, and behaviors to pubsweet. There are many we have bundled by default, and you can create your own. To learn more about components,
-[read the documentation](TODO!).
+[read the documentation](https://pubsweet.org/docs/components).
 
 Run `add` or `remove` within your app directory, followed by one or more components, to add and remove components. These subcommands use `yarn` to add or remove the components and updates the configuration for your app accordingly.
 

yarn.lock

@@ -4,14 +4,14 @@
 
 "@pubsweet/db-manager@git+https://gitlab.coko.foundation/yld/db-manager.git":
   version "0.0.2"
-  resolved "git+https://gitlab.coko.foundation/yld/db-manager.git#c1ad2f4a798ab772dceabacfc3a397ab76b0f173"
+  resolved "git+https://gitlab.coko.foundation/yld/db-manager.git#02b77946327504a1e201544d66f7c755e665ea29"
   dependencies:
     "@pubsweet/logger" "0.0.1"
     fs-extra "^4.0.2"
     isomorphic-fetch "^2.2.1"
     joi "^11.0.2"
     pouchdb "^6.3.4"
-    pubsweet-server "git+https://gitlab.coko.foundation/yld/pubsweet-server.git"
+    pubsweet-server "git+https://gitlab.coko.foundation/pubsweet/pubsweet-server.git"
 
 "@pubsweet/logger@0.0.1", "@pubsweet/logger@^0.0.1":
   version "0.0.1"
@@ -344,6 +344,10 @@ authsome@0.0.4:
   version "0.0.4"
   resolved "https://registry.yarnpkg.com/authsome/-/authsome-0.0.4.tgz#7784887e6c17fdf126949c084cc3f543291dfb19"
 
+authsome@0.0.6:
+  version "0.0.6"
+  resolved "https://registry.yarnpkg.com/authsome/-/authsome-0.0.6.tgz#505a2555a87e29f47af9a0d511bc553558073d72"
+
 aws-sign2@~0.6.0:
   version "0.6.0"
   resolved "https://registry.yarnpkg.com/aws-sign2/-/aws-sign2-0.6.0.tgz#14342dd38dbcc94d0e5b87d763cd63612c0e794f"
@@ -2349,7 +2353,7 @@ expect@^21.2.1:
     jest-message-util "^21.2.1"
     jest-regex-util "^21.2.0"
 
-express@^4.14.0, express@^4.15.3:
+express@^4.15.3, express@^4.16.1:
   version "4.16.1"
   resolved "https://registry.yarnpkg.com/express/-/express-4.16.1.tgz#6b33b560183c9b253b7b62144df33a4654ac9ed0"
   dependencies:
@@ -4316,7 +4320,7 @@ moment@2.x.x:
   version "2.18.1"
   resolved "https://registry.yarnpkg.com/moment/-/moment-2.18.1.tgz#c36193dd3ce1c2eed2adb7c802dbbc77a81b1c0f"
 
-morgan@^1.7.0:
+morgan@^1.8.2:
   version "1.9.0"
   resolved "https://registry.yarnpkg.com/morgan/-/morgan-1.9.0.tgz#d01fa6c65859b76fcf31b3cb53a3821a311d8051"
   dependencies:
@@ -5491,24 +5495,25 @@ pubsweet-component-users-manager@^0.1.6:
   version "0.1.6"
   resolved "https://registry.yarnpkg.com/pubsweet-component-users-manager/-/pubsweet-component-users-manager-0.1.6.tgz#0c7df8bfa3bddd5387422040c2d0ee908f7b0380"
 
-pubsweet-server@^1.0.0-alpha.3, "pubsweet-server@git+https://gitlab.coko.foundation/yld/pubsweet-server.git":
+pubsweet-server@^1.0.0-alpha.3, "pubsweet-server@git+https://gitlab.coko.foundation/pubsweet/pubsweet-server.git":
   version "1.0.0-alpha.3"
-  resolved "git+https://gitlab.coko.foundation/yld/pubsweet-server.git#728e00e5b98392bd95c23a0cf74c48473a4597ce"
+  resolved "git+https://gitlab.coko.foundation/pubsweet/pubsweet-server.git#4239a422cf12e70b300911da5d3bd9da72c123bf"
   dependencies:
-    authsome "0.0.4"
+    "@pubsweet/logger" "^0.0.1"
+    authsome "0.0.6"
     bcrypt "^1.0.2"
     body-parser "^1.15.2"
     colors "^1.1.2"
     config "^1.26.2"
     cookie-parser "^1.4.3"
-    express "^4.14.0"
+    express "^4.16.1"
     helmet "^3.8.1"
     http-status-codes "^1.0.6"
     joi "^10.0.6"
     jsonwebtoken "^7.1.7"
     lodash "^4.0.0"
     minimist "^1.2.0"
-    morgan "^1.7.0"
+    morgan "^1.8.2"
     multer "^1.1.0"
     passport "^0.3.2"
     passport-anonymous "^1.0.1"
@@ -5537,7 +5542,7 @@ pubsweet-theme-plugin@^0.0.1:
 
 "pubsweet@git+https://gitlab.coko.foundation/yld/pubsweet-cli.git#refactor/db-manager":
   version "1.0.0-alpha.4"
-  resolved "git+https://gitlab.coko.foundation/yld/pubsweet-cli.git#cb4b2a653c207893c0cc0866ce41ad5300361b05"
+  resolved "git+https://gitlab.coko.foundation/yld/pubsweet-cli.git#2ff7a981bb5ebf49175281acebe2550829fac189"
   dependencies:
     "@pubsweet/db-manager" "git+https://gitlab.coko.foundation/yld/db-manager.git"
     "@pubsweet/logger" "^0.0.1"