chore(xpub): remove xpub packages and lerna

.dockerignore

-packages/*/node_modules/**/*
-packages/*/node_modules
+node_modules

.eslintignore

-**/_build
-**/node_modules
+_build
+node_modules

.gitlab-ci.yml

@@ -53,10 +53,6 @@ push:latest:
   only:
   - master
 
-# -----------------------------------------------
-# xpub-collabra ---------------------------------
-# -----------------------------------------------
-
 review:xpub-collabra:
   image: pubsweet/deployer:latest
   stage: review
@@ -134,80 +130,3 @@ demo:xpub-collabra:
   script:
     - source deploy.sh
     - create_deployment
-
-# -----------------------------------------------
-# xpub-ui ---------------------------------------
-# -----------------------------------------------
-
-#review:xpub-ui:
-#  image: pubsweet/deployer:latest
-#  stage: review
-#  variables:
-#    PACKAGE_NAME: xpub-ui
-#  environment:
-#    name: $PACKAGE_NAME/review/$CI_COMMIT_REF_NAME
-#    # !! kube-lego will fail if domain > 63 chars
-#    url: "http://${CI_ENVIRONMENT_SLUG}.${BASE_DOMAIN}"
-#    on_stop: stop_review:xpub-ui
-#  except:
-#  - master
-#  script:
-#    - source deploy.sh
-#    - create_deployment
-#
-#stop_review:xpub-ui:
-#  image: pubsweet/deployer:latest
-#  stage: review
-#  variables:
-#    PACKAGE_NAME: xpub-ui
-#    GIT_STRATEGY: none
-#  when: manual
-#  environment:
-#    name: $PACKAGE_NAME/review/$CI_COMMIT_REF_NAME
-#    action: stop
-#  script:
-#    - source deploy.sh
-#    - delete_deployment
-#
-#staging:xpub-ui:
-#  image: pubsweet/deployer:latest
-#  stage: staging
-#  variables:
-#    PACKAGE_NAME: xpub-ui
-#  environment:
-#    name: $PACKAGE_NAME/staging
-#    url: "https://${CI_ENVIRONMENT_SLUG}.${BASE_DOMAIN}"
-#  only:
-#  - master
-#  script:
-#    - source deploy.sh
-#    - create_deployment
-#
-#production:xpub-ui:
-#  image: pubsweet/deployer:latest
-#  stage: production
-#  variables:
-#    PACKAGE_NAME: xpub-ui
-#  environment:
-#    name: $PACKAGE_NAME/production
-#    url: "https://${CI_ENVIRONMENT_SLUG}.${BASE_DOMAIN}"
-#  when: manual
-#  only:
-#  - master
-#  script:
-#    - source deploy.sh
-#    - create_deployment
-#
-#demo:xpub-ui:
-#  image: pubsweet/deployer:latest
-#  stage: demo
-#  variables:
-#    PACKAGE_NAME: xpub-ui
-#  environment:
-#    name: $PACKAGE_NAME/demo
-#    url: "https://${CI_ENVIRONMENT_SLUG}.${BASE_DOMAIN}"
-#  when: manual
-#  script:
-#    - source deploy.sh
-#    - create_deployment
-#

Dockerfile

 FROM xpub/xpub:base
 
-COPY package.json yarn.lock ./
-COPY lerna.json .babelrc .eslintignore .eslintrc .prettierrc .stylelintignore .stylelintrc ./
-COPY packages packages
+# TODO package namespacing no longer necessary 
+RUN mkdir -p ${HOME}/packages/xpub-collabra
+WORKDIR ${HOME}/packages/xpub-collabra
 
-RUN [ "yarn", "config", "set", "workspaces-experimental", "true" ]
+COPY package.json yarn.lock ./
 
 # We do a development install because react-styleguidist is a dev dependency
 RUN [ "yarn", "install", "--frozen-lockfile" ]
@@ -13,18 +13,18 @@ RUN [ "yarn", "install", "--frozen-lockfile" ]
 RUN [ "yarn", "cache", "clean"]
 RUN [ "rm", "-rf", "/npm-packages-offline-cache"]
 
-ENV NODE_ENV "production"
+COPY app.js .babelrc .eslintignore .eslintrc .prettierrc .stylelintignore .stylelintrc ./
 
-# We are temporarily going to use the same image with different commands to deploy different apps in the monorepo. This is bad :(.
+COPY static static
+COPY api api
+COPY webpack webpack
+COPY config config
+COPY logs logs
+COPY app app
 
-WORKDIR ${HOME}/packages/xpub-collabra
-RUN [ "npx", "pubsweet", "build"]
+ENV NODE_ENV "production"
 
-## No xpub-ui to deploy yet
-# WORKDIR ${HOME}/packages/xpub-ui
-# RUN [ "npm", "run", "styleguide:build" ]
-## Create file for kubernetes health checks
-# RUN touch ./styleguide/health
+RUN [ "npx", "pubsweet", "build"]
 
 EXPOSE 3000
 

README.md

+# xpub-collabra  
+
+An MVP implementation of the first design sessions with [Collabra Psychology](https://www.collabra.org/), which allows a user to go through the process of creating a submission, assigning editors and reviewers, submitting reviews and submitting a decision.
+
 Note: xpub is still _very_ new. This repository contains an initial set of components but is not yet ready for use.
 
 ## Roadmap
@@ -28,7 +32,7 @@ You can follow more fine-grained lists of things that we're working on
 
 * `xpub-collabra`: a PubSweet application that provides configuration and routing for a journal.
 
-### xpub packages
+### xpub packages (located in pubsweet/pubsweet)
 
 * `xpub-connect`: a helper component for connecting pages to data
 * `xpub-edit`: WYSIWYG editors for use in xpub forms
@@ -45,7 +49,7 @@ In the root directory, run `yarn` to install all the dependencies.
 
 ## Configuration
 
-To enable manuscript conversion via INK, add the following values to `packages/xpub-collabra/config/local-development.json` (ask in [the xpub channel](https://mattermost.coko.foundation/coko/channels/xpub) if you need an account):
+To enable manuscript conversion via INK, add the following values to `config/local-development.json` (ask in [the xpub channel](https://mattermost.coko.foundation/coko/channels/xpub) if you need an account):
 
 ```json
 {
@@ -62,9 +66,8 @@ To enable manuscript conversion via INK, add the following values to `packages/x
 
 ## Running the app
 
-1. `cd packages/xpub-collabra`
-2. The first time you run the app, initialise the database with `yarn run setupdb` (press Enter when asked for a collection title, to skip that step).
-3. `yarn start`
+1. The first time you run the app, initialise the database with `yarn run setupdb` (press Enter when asked for a collection title, to skip that step).
+2. `yarn start`
 
 ## CI