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  • #713

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Created Nov 11, 2021 by Ryan Dix-Peek@ryandixpeekMaintainer

[CoLab] Investigate use bioRxiv search API to replace EuropePMC

Description; bioRxiv have given Paul access to their new search API. We could use this to replace the call to EuropePMC search when fetching new articles as it searches the full text of the articles rather than only the abstract and title (as with EuropePMC). Paul is hoping that the response format is similar to that from the bioRxiv API we use to populate the NCRC triage list so might not be a lot of work to switch over.

Here's an example search https://api.biorxiv.org/fulltext?server=all&terms=ion+channel&date_from=2021-06-01&date_to=2021-06-08

Useful links;

  • bioRxiv API
  • NCRC Biorxiv import task; #295 (closed)
  • Colab europepmc.org API import task; #472 (closed)
  • Colab data mapping spreadheet
Edited Nov 11, 2021 by Ryan Dix-Peek
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