|
|
# Integration specs
|
|
|
|
|
|
[[_TOC_]]
|
|
|
|
|
|
## Conversion and Loading
|
|
|
|
|
|
1. Word conversion documented in: #73
|
|
|
2. XML conversion documented in: #278 and #387
|
|
|
3. PDF integration with Apex documented in: #404
|
|
|
|
|
|
## Validations on filename, file type and file size
|
|
|
|
|
|
*(Draft for NCBI review)*
|
|
|
|
|
|
**All files**
|
|
|
|
|
|
All files, whether submitted in the UI or by FTP, must meet this base validation:
|
|
|
|
|
|
The filenames:
|
|
|
* are limited to 20 characters in length
|
|
|
* should only contain letters, numbers, hyphens, dashes, ~~periods,~~ and underscores
|
|
|
* must not contain spaces
|
|
|
|
|
|
All files are versioned by filename *excluding the extension*. In other words, the version of an existing file is increased when a new file with the *same* filename is uploaded. The exception is Review files (those uploaded in the review panel on the Preview tab) which are not versioned.
|
|
|
|
|
|
Additional validations according to the category of the file are provided below.
|
|
|
|
|
|
**Cover files**
|
|
|
|
|
|
As confirmed [here](https://gitlab.coko.foundation/ncbi/ncbi/-/issues/574#note_63552):
|
|
|
|
|
|
1. Validate file type is: TIFF, EPS, PNG, JPEG, PDS, or EPS.
|
|
|
2. No file size validation, files are expected to be less than 100 MB.
|
|
|
|
|
|
**Source files**
|
|
|
|
|
|
For both book types (chapter-processed and whole book) the filename must not begin with a numeral **unless** it's being submitted to an XML workflow book.
|
|
|
|
|
|
Additionally, for chapter-processed books the filename must be unique per book component in the same book and it must must match for the source and converted (since `source` is not a required file category in the database model and book components are created and updated by filename).
|
|
|
|
|
|
**Supplementary files**
|
|
|
|
|
|
1. File type is not validated
|
|
|
2. Max file size = 1 GB
|
|
|
|
|
|
|
|
|
**Bookshelf display PDF**
|
|
|
|
|
|
(in progress)
|
|
|
|
|
|
**Images**
|
|
|
|
|
|
Images can be submitted in the PDF and XML workflow. No additional validations are done.
|
|
|
|
|
|
**Support files**
|
|
|
|
|
|
Support files can be submitted in the PDF workflow. No additional validations are done.
|
|
|
|
|
|
**Review files**
|
|
|
|
|
|
The file size should be limited to 1 GB (corresponding to the suppl file size limit).
|
|
|
|
|
|
## Error categories
|
|
|
|
|
|
Related issues for reference:
|
|
|
|
|
|
* #143
|
|
|
|
|
|
**NOTE:** A category may contain many different notice names with different severities and assignees. We may add more names to each category in the future, and we will need to translate the attributes in the JSON to meaningful terms in the BCMS.
|
|
|
|
|
|
<table class="relative-table wrapped confluenceTable"><colgroup><col style="width: 218.0px;" /><col style="width: 58.0px;" /><col /><col /><col style="width: 1166.0px;" /></colgroup><tbody><tr><th class="confluenceTh">Category</th><th class="confluenceTh" colspan="1">Notice name</th><th class="confluenceTh" colspan="1">Severity</th><th class="confluenceTh" colspan="1">Assignee</th><th class="confluenceTh">Example</th></tr><tr><td class="confluenceTd">Corrupt File</td><td class="confluenceTd" colspan="1">corrupt_file</td><td class="confluenceTd" colspan="1">ERROR</td><td class="confluenceTd" colspan="1">publisher</td><td class="confluenceTd">unable to open zip file x</td></tr><tr><td class="confluenceTd" colspan="1">Missing File</td><td class="confluenceTd" colspan="1">missing_file</td><td class="confluenceTd" colspan="1">ERROR</td><td class="confluenceTd" colspan="1">publisher</td><td class="confluenceTd" colspan="1">cannot find file x.png</td></tr><tr><td class="confluenceTd" colspan="1">Word Conversion</td><td class="confluenceTd" colspan="1">word_conversion</td><td class="confluenceTd" colspan="1">ERROR</td><td class="confluenceTd" colspan="1">publisher</td><td class="confluenceTd" colspan="1">Unsupported related-object type: media</td></tr><tr><td class="confluenceTd" colspan="1">XML Conversion</td><td class="confluenceTd" colspan="1">xml_conversion</td><td class="confluenceTd" colspan="1">ERROR</td><td class="confluenceTd" colspan="1">pmc</td><td class="confluenceTd" colspan="1">ERROR : 2020-06-23 16:09:09: Conversion failed for /net/ipmc-prod/pmc3/Bookshelf/books/springerbooks/20200623/ftp_PUB_20-06-23_17-06-46/BOK=978-3-030-38281-0/978-3-030-38281-0_Book.xml: Cannot resolve ref-type: name=BibSection rid=BSec1</td></tr><tr><td class="confluenceTd" colspan="1">Image Conversion</td><td class="confluenceTd" colspan="1">image_conversion</td><td class="confluenceTd" colspan="1">ERROR</td><td class="confluenceTd" colspan="1">pmc</td><td class="confluenceTd" colspan="1">failed to define image 'gif/Aortic_valve.jpg' parameters</td></tr><tr><td class="confluenceTd" colspan="1">Invalid XML</td><td class="confluenceTd" colspan="1">invalid_xml</td><td class="confluenceTd" colspan="1">ERROR</td><td class="confluenceTd" colspan="1">publisher</td><td class="confluenceTd" colspan="1">AV-138-18F(1).xml Validation Errors: Error: Expected whitespace after name in entity declaration</td></tr><tr><td class="confluenceTd" colspan="1">Style Check</td><td class="confluenceTd" colspan="1">style_check</td><td class="confluenceTd" colspan="1">WARN</td><td class="confluenceTd" colspan="1">publisher</td><td class="confluenceTd" colspan="1">block format in paragraph is not recommended</td></tr><tr><td class="confluenceTd" colspan="1">Table</td><td class="confluenceTd" colspan="1">table</td><td class="confluenceTd" colspan="1">WARN</td><td class="confluenceTd" colspan="1">publisher</td><td class="confluenceTd" colspan="1">table integrity check failed ... due to structural unsoundess</td></tr><tr><td class="confluenceTd" colspan="1">Metadata</td><td class="confluenceTd" colspan="1">metadata</td><td class="confluenceTd" colspan="1">WARN</td><td class="confluenceTd" colspan="1">publisher</td><td class="confluenceTd" colspan="1">Invalid date "11-07-2013" (Year is less than four digits)</td></tr><tr><td class="confluenceTd" colspan="1">Citation</td><td class="confluenceTd" colspan="1">citation</td><td class="confluenceTd" colspan="1">WARN or QUERY (Schematron)</td><td class="confluenceTd" colspan="1">publisher</td><td class="confluenceTd" colspan="1">eXtyles Q10 Medline cannot find the journal "Compt Rend". Please check the journal name. (Ref. 5 "Paillot, 1926")</td></tr><tr><td class="confluenceTd" colspan="1">Cross Reference</td><td class="confluenceTd" colspan="1">cross_reference</td><td class="confluenceTd" colspan="1">WARN or QUERY (Schematron)</td><td class="confluenceTd" colspan="1">publisher</td><td class="confluenceTd" colspan="1">eXtyles Q61 Reference 40 "Hukuhara" is not cited in the text. Please add an in-text citation or delete the reference.</td></tr><tr><td class="confluenceTd" colspan="1">Equation</td><td class="confluenceTd" colspan="1">equation</td><td class="confluenceTd" colspan="1">WARN</td><td class="confluenceTd" colspan="1">publisher</td><td class="confluenceTd" colspan="1">WARNING: This mml formula has descendant mml:mtext elements that contain only numerical values, should these numbers be tagged as number? See: <a href="http://www.w3.org/TR/MathML3/">http://www.w3.org/TR/MathML3/</a> | disp-formula ID: "bm3.deq4" | XPath: //disp-formula[@id='bm3.deq4']//mml:mtext[matches(normalize-space(.), '^ *[0-9\.,]+ *$', 'i')]</td></tr><tr><td class="confluenceTd" colspan="1">Supplemental Data</td><td class="confluenceTd" colspan="1">supplemental_data</td><td class="confluenceTd" colspan="1">WARN</td><td class="confluenceTd" colspan="1">publisher</td><td class="confluenceTd" colspan="1">WARNING: This app contains media descendants that are likely not evidence tables or questionnaire forms. Should these media descendants be captured as XML? See Tagger Guidelines on media and forms | app ID: 'app13a.app5' | app title: ' GRADE table' | XPath: //app[@id='app13a.app5']//media</td></tr><tr><td class="confluenceTd" colspan="1">Database Loader Checks</td><td class="confluenceTd" colspan="1">database_loader_check</td><td class="confluenceTd" colspan="1">ERROR</td><td class="confluenceTd" colspan="1">pmc</td><td class="confluenceTd" colspan="1">blob database is full</td></tr><tr><td class="confluenceTd" colspan="1">Task Monitor</td><td class="confluenceTd" colspan="1">task_monitor</td><td class="confluenceTd" colspan="1">ERROR</td><td class="confluenceTd" colspan="1">pmc</td><td class="confluenceTd" colspan="1">(this is a catch all when an error occurs, but a DTS message hasn't been properly generated, the task monitor sends a generic Task Monitor error)</td></tr><tr><td class="confluenceTd" colspan="1">Antivirus</td><td class="confluenceTd" colspan="1">antivirus</td><td class="confluenceTd" colspan="1">ERROR</td><td class="confluenceTd" colspan="1">pmc</td><td class="confluenceTd" colspan="1">ERROR: Could not connect to clamd on LocalSocket /var/run/clamd.scan/clamd.sock: Permission denied</td></tr><tr><td class="confluenceTd" colspan="1">PDF</td><td class="confluenceTd" colspan="1">pdf</td><td class="confluenceTd" colspan="1">ERROR</td><td class="confluenceTd" colspan="1">publisher</td><td class="confluenceTd" colspan="1">PDF pdf.x is password protected</td></tr><tr><td class="confluenceTd" colspan="1">Missing Agreement</td><td class="confluenceTd" colspan="1">missing_agreement</td><td class="confluenceTd" colspan="1">WARN</td><td class="confluenceTd" colspan="1">pmc</td><td class="confluenceTd" colspan="1">This title is not linked to a Bookshelf agreement </td></tr><tr><td class="confluenceTd" colspan="1">Unknown Publisher</td><td class="confluenceTd" colspan="1">unknown_publisher</td><td class="confluenceTd" colspan="1">WARN</td><td class="confluenceTd" colspan="1">pmc</td><td class="confluenceTd" colspan="1">This publisher is not linked to a participating Bookshelf publisher</td></tr><tr><td class="confluenceTd" colspan="1">Database Error</td><td class="confluenceTd" colspan="1">db_error</td><td class="confluenceTd" colspan="1">ERROR</td><td class="confluenceTd" colspan="1">pmc</td><td class="confluenceTd" colspan="1"><p>Database connection test failed</p></td></tr></tbody></table>
|
|
|
|
|
|
## BCMS settings
|
|
|
|
|
|
The BCMS has many settings that integrate with NCBI systems. [This working spreadsheet](https://docs.google.com/spreadsheets/d/1Xd0vKDbaYrajfnUmYqCnXUY5Ir0znqc7o0KGVp_okg0/edit?usp=sharing) tracks all settings.
|
|
|
|
|
|
1. Tab 1: all domain settings and their mapping to BCMS settings.
|
|
|
2. Tab 2: all non-domain settings
|
|
|
3. Tab 3: protected sheet for data validation of column categories.
|
|
|
|
|
|
(Previous version of domain settings moved to doc history [here](https://gitlab.coko.foundation/ncbi/ncbi/-/wikis/Deprecated-docs/docs-history#domain-attributes-and-setting))
|
|
|
|
|
|
## Full metadata requirements
|
|
|
|
|
|
<h2 class="auto-cursor-target">Book Metadata</h2>
|
|
|
<table class="wrapped">
|
|
|
<colgroup>
|
|
|
<col style="width: 451.0px;"/>
|
|
|
<col style="width: 183.0px;"/>
|
|
|
<col style="width: 177.0px;"/>
|
|
|
<col style="width: 111.0px;"/>
|
|
|
<col style="width: 36.0px;"/>
|
|
|
<col style="width: 101.0px;"/>
|
|
|
<col style="width: 101.0px;"/>
|
|
|
<col style="width: 95.0px;"/>
|
|
|
<col style="width: 87.0px;"/>
|
|
|
</colgroup>
|
|
|
<tbody>
|
|
|
<tr>
|
|
|
<th>metadata field / types</th>
|
|
|
<th colspan="1">subfields</th>
|
|
|
<th colspan="1">nested objects</th>
|
|
|
<th colspan="1">formatting</th>
|
|
|
<th>
|
|
|
<p>UI</p>
|
|
|
<p>
|
|
|
<br/>
|
|
|
</p>
|
|
|
</th>
|
|
|
<th>
|
|
|
<p>spreadsheet</p>
|
|
|
<p>
|
|
|
<br/>
|
|
|
</p>
|
|
|
</th>
|
|
|
<th colspan="1">tagged from word source</th>
|
|
|
<th colspan="1">tagged from pdf source</th>
|
|
|
<th colspan="1">tagged in xml source</th>
|
|
|
</tr>
|
|
|
<tr>
|
|
|
<td>
|
|
|
<p>abstract</p>
|
|
|
<ul>
|
|
|
<li>standard</li>
|
|
|
<li>structured</li>
|
|
|
<li>blurb</li>
|
|
|
<li>
|
|
|
<ac:inline-comment-marker ac:ref="5654b371-0a86-46ad-83b4-669040b7cf16">excerpt</ac:inline-comment-marker>
|
|
|
</li>
|
|
|
</ul>
|
|
|
<p>
|
|
|
<ac:inline-comment-marker ac:ref="5654b371-0a86-46ad-83b4-669040b7cf16">Note: an excerpt MAY not be tagged as an abstract in the metadata - it may be a content or section type in the body of the XML text that is used as an abstract for indexing in Books and PubMed. We do want to see this for QA of what will be sent to PubMed for indexing.</ac:inline-comment-marker>
|
|
|
</p>
|
|
|
</td>
|
|
|
<td colspan="1">
|
|
|
<ul>
|
|
|
<li>title</li>
|
|
|
<li>structured sections</li>
|
|
|
<li>paragraphs</li>
|
|
|
</ul>
|
|
|
</td>
|
|
|
<td colspan="1">
|
|
|
<ul>
|
|
|
<li>
|
|
|
<span style="color: rgb(51,102,255);">boxes</span>
|
|
|
</li>
|
|
|
<li>
|
|
|
<span style="color: rgb(51,102,255);">display quote</span>
|
|
|
</li>
|
|
|
<li>
|
|
|
<span style="color: rgb(51,102,255);">figures with labels and captions</span>
|
|
|
<ul>
|
|
|
<li>
|
|
|
<span style="color: rgb(51,102,255);">graphics</span>
|
|
|
</li>
|
|
|
<li>
|
|
|
<span style="color: rgb(51,102,255);">alternative versions (media, etc)</span>
|
|
|
</li>
|
|
|
<li>
|
|
|
<span style="color: rgb(51,102,255);">source attribution</span>
|
|
|
</li>
|
|
|
</ul>
|
|
|
</li>
|
|
|
<li>
|
|
|
<span style="color: rgb(51,102,255);">footnotes</span>
|
|
|
</li>
|
|
|
<li>
|
|
|
<span style="color: rgb(51,102,255);">preformat code</span>
|
|
|
</li>
|
|
|
<li>
|
|
|
<span style="color: rgb(51,102,255);">tables</span>
|
|
|
</li>
|
|
|
</ul>
|
|
|
<p>
|
|
|
<span style="color: rgb(51,102,255);">Note: we will not support the ability to add these via UI; if the XML has them from source, we would like in the UI to simply have a placeholder of "box here" or "table here"</span>
|
|
|
</p>
|
|
|
</td>
|
|
|
<td colspan="1">
|
|
|
<ul>
|
|
|
<li>bold</li>
|
|
|
<li>italic</li>
|
|
|
<li>underline</li>
|
|
|
<li>hyperlink</li>
|
|
|
<li>lists (bullet, number, alpha)</li>
|
|
|
</ul>
|
|
|
</td>
|
|
|
<td>Y</td>
|
|
|
<td>N</td>
|
|
|
<td colspan="1">N</td>
|
|
|
<td colspan="1">
|
|
|
<ac:inline-comment-marker ac:ref="d59e7498-2bcb-44af-a601-6f967a5b6449">varies</ac:inline-comment-marker>
|
|
|
</td>
|
|
|
<td colspan="1">
|
|
|
<span style="color: rgb(0,0,0);">varies</span>
|
|
|
</td>
|
|
|
</tr>
|
|
|
<tr>
|
|
|
<td colspan="1">
|
|
|
<p>book ids </p>
|
|
|
<p>
|
|
|
<span style="color: rgb(255,0,0);">**** see ids list already provided *** </span>
|
|
|
</p>
|
|
|
</td>
|
|
|
<td colspan="1">
|
|
|
<br/>
|
|
|
</td>
|
|
|
<td colspan="1">
|
|
|
<br/>
|
|
|
</td>
|
|
|
<td colspan="1">
|
|
|
<br/>
|
|
|
</td>
|
|
|
<td colspan="1">Y</td>
|
|
|
<td colspan="1">N</td>
|
|
|
<td colspan="1">N</td>
|
|
|
<td colspan="1">varies</td>
|
|
|
<td colspan="1">varies</td>
|
|
|
</tr>
|
|
|
<tr>
|
|
|
<td colspan="1">
|
|
|
<p>contributors</p>
|
|
|
<ul>
|
|
|
<li>author(s) - one or more<ul>
|
|
|
<li>given names, surname, suffix</li>
|
|
|
</ul>
|
|
|
</li>
|
|
|
<li>editor(s) - one or more<ul>
|
|
|
<li>given names, surnames, suffix</li>
|
|
|
</ul>
|
|
|
</li>
|
|
|
<li>organizations as authors - one or more<ul>
|
|
|
<li>
|
|
|
<span style="color: rgb(51,102,255);">collaborative authors part of organizational author</span>
|
|
|
</li>
|
|
|
<li>
|
|
|
<span style="color: rgb(51,102,255);">authors writing on behalf of the organization</span>
|
|
|
</li>
|
|
|
</ul>
|
|
|
</li>
|
|
|
</ul>
|
|
|
</td>
|
|
|
<td colspan="1">
|
|
|
<ul>
|
|
|
<li>affiliations<ul>
|
|
|
<li>address</li>
|
|
|
<li>country</li>
|
|
|
<li>email</li>
|
|
|
<li>label and fn linked to author / editor</li>
|
|
|
<li>institution</li>
|
|
|
</ul>
|
|
|
</li>
|
|
|
<li>roles</li>
|
|
|
<li>degrees</li>
|
|
|
<li>corresponding author (Y / N)</li>
|
|
|
</ul>
|
|
|
</td>
|
|
|
<td colspan="1">
|
|
|
<br/>
|
|
|
</td>
|
|
|
<td colspan="1">
|
|
|
<ul>
|
|
|
<li>affiliations<ul>
|
|
|
<li>bold</li>
|
|
|
<li>italic</li>
|
|
|
<li>superscript</li>
|
|
|
<li>hyperlink</li>
|
|
|
</ul>
|
|
|
</li>
|
|
|
</ul>
|
|
|
</td>
|
|
|
<td colspan="1">Y</td>
|
|
|
<td colspan="1">
|
|
|
<p>
|
|
|
<span style="color: rgb(0,0,255);">Note: for those nested collaborative and on behalf of authors in blue, these would need to be input via Spreadsheet only. All others would be supported via UI</span>
|
|
|
</p>
|
|
|
</td>
|
|
|
<td colspan="1">N</td>
|
|
|
<td colspan="1">varies</td>
|
|
|
<td colspan="1">Y</td>
|
|
|
</tr>
|
|
|
<tr>
|
|
|
<td colspan="1">
|
|
|
<p>custom metadata </p>
|
|
|
<p>(example: NCBI source type)</p>
|
|
|
</td>
|
|
|
<td colspan="1">
|
|
|
<br/>
|
|
|
</td>
|
|
|
<td colspan="1">
|
|
|
<br/>
|
|
|
</td>
|
|
|
<td colspan="1">
|
|
|
<br/>
|
|
|
</td>
|
|
|
<td colspan="1">N</td>
|
|
|
<td colspan="1">
|
|
|
<p>Y</p>
|
|
|
<p>(fields / types to be developed in template)</p>
|
|
|
</td>
|
|
|
<td colspan="1">N</td>
|
|
|
<td colspan="1">N</td>
|
|
|
<td colspan="1">
|
|
|
<span style="color: rgb(0,0,0);">N</span>
|
|
|
</td>
|
|
|
</tr>
|
|
|
<tr>
|
|
|
<td>
|
|
|
<p>funding information</p>
|
|
|
<ul>
|
|
|
<li>grant(s) / contract number(s)</li>
|
|
|
<li>funder(s)</li>
|
|
|
<li>principal awardee(s)</li>
|
|
|
<li>statement</li>
|
|
|
</ul>
|
|
|
<p>Note: funding information can be in the XML <strong>and / or</strong> provided via GrantHub data - see issue 129)</p>
|
|
|
</td>
|
|
|
<td colspan="1">
|
|
|
<ul>
|
|
|
<li>statement paragraph</li>
|
|
|
</ul>
|
|
|
</td>
|
|
|
<td colspan="1">
|
|
|
<br/>
|
|
|
</td>
|
|
|
<td colspan="1">
|
|
|
<ul>
|
|
|
<li>bold</li>
|
|
|
<li>italic</li>
|
|
|
<li>hyperlink</li>
|
|
|
</ul>
|
|
|
</td>
|
|
|
<td>Y</td>
|
|
|
<td>N</td>
|
|
|
<td colspan="1">
|
|
|
<p>N</p>
|
|
|
<p>(granthub data needs to be supported too)</p>
|
|
|
</td>
|
|
|
<td colspan="1">
|
|
|
<p>varies</p>
|
|
|
<p>(granthub data needs to be supported too)</p>
|
|
|
</td>
|
|
|
<td colspan="1">
|
|
|
<p>varies</p>
|
|
|
<p>(granthub data data needs to be supported too)</p>
|
|
|
</td>
|
|
|
</tr>
|
|
|
<tr>
|
|
|
<td colspan="1">
|
|
|
<p>keywords</p>
|
|
|
</td>
|
|
|
<td colspan="1">
|
|
|
<br/>
|
|
|
</td>
|
|
|
<td colspan="1">
|
|
|
<br/>
|
|
|
</td>
|
|
|
<td colspan="1">
|
|
|
<br/>
|
|
|
</td>
|
|
|
<td colspan="1">N</td>
|
|
|
<td colspan="1">
|
|
|
<p>Y</p>
|
|
|
<p>(fields / types to be developed in template)</p>
|
|
|
</td>
|
|
|
<td colspan="1">Y</td>
|
|
|
<td colspan="1">varies</td>
|
|
|
<td colspan="1">
|
|
|
<span style="color: rgb(0,0,0);">varies</span>
|
|
|
</td>
|
|
|
</tr>
|
|
|
<tr>
|
|
|
<td colspan="1">
|
|
|
<p>notes</p>
|
|
|
<ul>
|
|
|
<li>author notes</li>
|
|
|
<li>disclaimer</li>
|
|
|
<li>conflict of interest</li>
|
|
|
<li>edition statement</li>
|
|
|
<li>
|
|
|
<span style="color: rgb(0,0,255);">generic</span>
|
|
|
</li>
|
|
|
</ul>
|
|
|
<p>
|
|
|
<span style="color: rgb(0,0,255);">Question: can user enter a type if select generic and / or keep it blank?</span>
|
|
|
</p>
|
|
|
<p>
|
|
|
<span style="color: rgb(0,0,255);">Question: what if author note or conflict of interest is linked by footnotes in XML data to an author or title?</span>
|
|
|
</p>
|
|
|
</td>
|
|
|
<td colspan="1">
|
|
|
<ul>
|
|
|
<li>title</li>
|
|
|
<li>paragraph(s)</li>
|
|
|
</ul>
|
|
|
</td>
|
|
|
<td colspan="1">
|
|
|
<ul>
|
|
|
<li>
|
|
|
<span style="color: rgb(51,102,255);">boxes</span>
|
|
|
</li>
|
|
|
<li>
|
|
|
<span style="color: rgb(51,102,255);">figures with labels and captions</span>
|
|
|
<ul>
|
|
|
<li>
|
|
|
<span style="color: rgb(51,102,255);">graphics</span>
|
|
|
</li>
|
|
|
<li>
|
|
|
<span style="color: rgb(51,102,255);">alternative versions (media, etc)</span>
|
|
|
</li>
|
|
|
<li>
|
|
|
<span style="color: rgb(51,102,255);">source attribution</span>
|
|
|
</li>
|
|
|
</ul>
|
|
|
</li>
|
|
|
<li>
|
|
|
<span style="color: rgb(51,102,255);">footnotes</span>
|
|
|
</li>
|
|
|
<li>
|
|
|
<span style="color: rgb(51,102,255);">preformat code</span>
|
|
|
</li>
|
|
|
<li>
|
|
|
<span style="color: rgb(51,102,255);">tables</span>
|
|
|
</li>
|
|
|
</ul>
|
|
|
<p>
|
|
|
<span style="color: rgb(51,102,255);">Note: we will not support the ability to add these via UI; if the XML has them from source, we would like in the UI to simply have a placeholder of "box here" or "table here"</span>
|
|
|
</p>
|
|
|
</td>
|
|
|
<td colspan="1">
|
|
|
<ul>
|
|
|
<li>bold</li>
|
|
|
<li>italic</li>
|
|
|
<li>hyperlink</li>
|
|
|
<li>lists (bullet, numbered, alpha)</li>
|
|
|
</ul>
|
|
|
</td>
|
|
|
<td colspan="1">Y</td>
|
|
|
<td colspan="1">N</td>
|
|
|
<td colspan="1">N</td>
|
|
|
<td colspan="1">Y</td>
|
|
|
<td colspan="1">Y</td>
|
|
|
</tr>
|
|
|
<tr>
|
|
|
<td colspan="1">
|
|
|
<p>permissions</p>
|
|
|
<ul>
|
|
|
<li>copyright<ul>
|
|
|
<li>statement </li>
|
|
|
<li>year</li>
|
|
|
</ul>
|
|
|
</li>
|
|
|
<li>license<ul>
|
|
|
<li>open access?</li>
|
|
|
<li>creative commons license type</li>
|
|
|
<li>license paragraph / statement</li>
|
|
|
</ul>
|
|
|
</li>
|
|
|
</ul>
|
|
|
</td>
|
|
|
<td colspan="1">
|
|
|
<br/>
|
|
|
</td>
|
|
|
<td colspan="1">
|
|
|
<br/>
|
|
|
</td>
|
|
|
<td colspan="1">
|
|
|
<ul>
|
|
|
<li>statements<ul>
|
|
|
<li>bold</li>
|
|
|
<li>italic</li>
|
|
|
<li>hyperlinks</li>
|
|
|
</ul>
|
|
|
</li>
|
|
|
</ul>
|
|
|
</td>
|
|
|
<td colspan="1">Y</td>
|
|
|
<td colspan="1">N</td>
|
|
|
<td colspan="1">N</td>
|
|
|
<td colspan="1">varies</td>
|
|
|
<td colspan="1">Y</td>
|
|
|
</tr>
|
|
|
<tr>
|
|
|
<td colspan="1">
|
|
|
<p>publication date and history</p>
|
|
|
<ul>
|
|
|
<li>publication date and type<ul>
|
|
|
<li>year, <span style="color: rgb(0,0,0);">month, day</span>
|
|
|
</li>
|
|
|
<li>
|
|
|
<span style="color: rgb(0,0,0);">print / electronic (if electronic is it an open range?)</span>
|
|
|
</li>
|
|
|
</ul>
|
|
|
</li>
|
|
|
<li>
|
|
|
<span style="color: rgb(0,0,0);">publication history</span>
|
|
|
<ul>
|
|
|
<li>created date</li>
|
|
|
<li>updated date</li>
|
|
|
<li>received</li>
|
|
|
<li>revised date</li>
|
|
|
<li>reviewed date</li>
|
|
|
<li>accepted date</li>
|
|
|
<li>
|
|
|
<span style="color: rgb(0,0,255);">other?</span>
|
|
|
</li>
|
|
|
</ul>
|
|
|
</li>
|
|
|
</ul>
|
|
|
<p>
|
|
|
<span style="color: rgb(0,0,255);">Note: in XML data there may be one-off unique types of history dates - would we be able to display these from the XML or note it as other?</span>
|
|
|
</p>
|
|
|
<p>
|
|
|
<br/>
|
|
|
</p>
|
|
|
</td>
|
|
|
<td colspan="1">
|
|
|
<br/>
|
|
|
</td>
|
|
|
<td colspan="1">
|
|
|
<br/>
|
|
|
</td>
|
|
|
<td colspan="1">
|
|
|
<br/>
|
|
|
</td>
|
|
|
<td colspan="1">Y</td>
|
|
|
<td colspan="1">N</td>
|
|
|
<td colspan="1">N</td>
|
|
|
<td colspan="1">varies</td>
|
|
|
<td colspan="1">Y</td>
|
|
|
</tr>
|
|
|
<tr>
|
|
|
<td colspan="1">
|
|
|
<p>publisher</p>
|
|
|
<ul>
|
|
|
<li>publisher name</li>
|
|
|
<li>publisher location <ul>
|
|
|
<li>city </li>
|
|
|
<li>
|
|
|
<ac:inline-comment-marker ac:ref="596c8ebe-21ce-4ab9-a5cf-aea4747ec7de">state, province or country</ac:inline-comment-marker>
|
|
|
</li>
|
|
|
</ul>
|
|
|
</li>
|
|
|
</ul>
|
|
|
</td>
|
|
|
<td colspan="1">
|
|
|
<br/>
|
|
|
</td>
|
|
|
<td colspan="1">
|
|
|
<br/>
|
|
|
</td>
|
|
|
<td colspan="1">
|
|
|
<br/>
|
|
|
</td>
|
|
|
<td colspan="1">Y</td>
|
|
|
<td colspan="1">N</td>
|
|
|
<td colspan="1">N</td>
|
|
|
<td colspan="1">varies</td>
|
|
|
<td colspan="1">Y</td>
|
|
|
</tr>
|
|
|
<tr>
|
|
|
<td colspan="1">
|
|
|
<p>
|
|
|
<ac:inline-comment-marker ac:ref="c9d6b497-c9b3-4a4b-9ae9-48e9760e97f2">
|
|
|
<span style="color: rgb(0,0,255);">collection</span> and series information</ac:inline-comment-marker>
|
|
|
</p>
|
|
|
<ul>
|
|
|
<li>series name</li>
|
|
|
<li>volume number</li>
|
|
|
<li> type (publisher or ncbi)</li>
|
|
|
</ul>
|
|
|
<p>
|
|
|
<span style="color: rgb(0,0,255);">Note: series information must be taken from UI or source information since a book may have a publisher series information that does NOT correspond to an ncbi collection; NCBI collection metadata must be included when sending a book to pmc, but it should be copied from the Collection Metadata section to avoid errors and discrepancies</span>
|
|
|
</p>
|
|
|
</td>
|
|
|
<td colspan="1">
|
|
|
<br/>
|
|
|
</td>
|
|
|
<td colspan="1">
|
|
|
<br/>
|
|
|
</td>
|
|
|
<td colspan="1">
|
|
|
<br/>
|
|
|
</td>
|
|
|
<td colspan="1">Y</td>
|
|
|
<td colspan="1">N</td>
|
|
|
<td colspan="1">N</td>
|
|
|
<td colspan="1">varies</td>
|
|
|
<td colspan="1">
|
|
|
<span style="color: rgb(0,0,0);">varies</span>
|
|
|
</td>
|
|
|
</tr>
|
|
|
<tr>
|
|
|
<td colspan="1">subject groups</td>
|
|
|
<td colspan="1">
|
|
|
<br/>
|
|
|
</td>
|
|
|
<td colspan="1">
|
|
|
<br/>
|
|
|
</td>
|
|
|
<td colspan="1">
|
|
|
<br/>
|
|
|
</td>
|
|
|
<td colspan="1">N</td>
|
|
|
<td colspan="1">
|
|
|
<p>Y</p>
|
|
|
<p>(fields / types to be developed in template)</p>
|
|
|
</td>
|
|
|
<td colspan="1">N</td>
|
|
|
<td colspan="1">N</td>
|
|
|
<td colspan="1">
|
|
|
<span style="color: rgb(0,0,0);">varies</span>
|
|
|
</td>
|
|
|
</tr>
|
|
|
<tr>
|
|
|
<td colspan="1">
|
|
|
<p>
|
|
|
<span style="color: rgb(51,102,255);">suggested citation</span>
|
|
|
</p>
|
|
|
<p>
|
|
|
<span style="color: rgb(51,102,255);">Note: we do not want to display suggested citations in UI to avoid confusion. When we discuss PDF workflow we need to discuss use case of funded investigator uploading a funded chapter and having the ability to include a book citation for it, which would go to PDF data supplier to tag properly in XML - this is separate from a supported metadata field though</span>
|
|
|
</p>
|
|
|
<p>
|
|
|
<br/>
|
|
|
</p>
|
|
|
</td>
|
|
|
<td colspan="1">
|
|
|
<br/>
|
|
|
</td>
|
|
|
<td colspan="1">
|
|
|
<br/>
|
|
|
</td>
|
|
|
<td colspan="1">
|
|
|
<br/>
|
|
|
</td>
|
|
|
<td colspan="1">N</td>
|
|
|
<td colspan="1">
|
|
|
<span style="color: rgb(51,102,255);">N</span>
|
|
|
</td>
|
|
|
<td colspan="1">N</td>
|
|
|
<td colspan="1">
|
|
|
<span style="color: rgb(51,102,255);">varies </span>
|
|
|
</td>
|
|
|
<td colspan="1">Y</td>
|
|
|
</tr>
|
|
|
<tr>
|
|
|
<td>
|
|
|
<p>title and edition information</p>
|
|
|
<ul>
|
|
|
<li>main title</li>
|
|
|
<li>subtitle(s) - one or more<ul>
|
|
|
<li>subtitle in text</li>
|
|
|
<li>
|
|
|
<span style="color: rgb(0,0,0);">version</span>
|
|
|
</li>
|
|
|
</ul>
|
|
|
</li>
|
|
|
<li>
|
|
|
<span style="color: rgb(0,0,0);">alternative title</span>
|
|
|
</li>
|
|
|
<li>
|
|
|
<span style="color: rgb(0,0,0);">edition</span>
|
|
|
</li>
|
|
|
</ul>
|
|
|
</td>
|
|
|
<td colspan="1">
|
|
|
<br/>
|
|
|
</td>
|
|
|
<td colspan="1">
|
|
|
<br/>
|
|
|
</td>
|
|
|
<td colspan="1">
|
|
|
<ul>
|
|
|
<li>italic</li>
|
|
|
<li>subscript</li>
|
|
|
<li>superscript</li>
|
|
|
<li>small cap</li>
|
|
|
</ul>
|
|
|
</td>
|
|
|
<td>Y</td>
|
|
|
<td>N</td>
|
|
|
<td colspan="1">N</td>
|
|
|
<td colspan="1">varies</td>
|
|
|
<td colspan="1">Y</td>
|
|
|
</tr>
|
|
|
<tr>
|
|
|
<td>
|
|
|
<p>
|
|
|
<span style="color: rgb(51,102,255);">link groups</span>
|
|
|
</p>
|
|
|
<ul>
|
|
|
<li>
|
|
|
<span style="color: rgb(51,102,255);">supplementary files</span>
|
|
|
</li>
|
|
|
<li>
|
|
|
<span style="color: rgb(51,102,255);">link to source version url (if no doi)</span>
|
|
|
</li>
|
|
|
<li>
|
|
|
<span style="color: rgb(51,102,255);">related publications</span>
|
|
|
</li>
|
|
|
</ul>
|
|
|
<p>
|
|
|
<br/>
|
|
|
</p>
|
|
|
<p>
|
|
|
<span style="color: rgb(51,102,255);">
|
|
|
<ac:inline-comment-marker ac:ref="a3837a37-8fe2-45cb-89a0-9a74980ede13">Note: link groups are USUALLY set as book settings rather than contained in metadata, but we have a few legacy cases that they are in metadata (but do not need to show in UI)</ac:inline-comment-marker>
|
|
|
</span>
|
|
|
</p>
|
|
|
<p>
|
|
|
<span style="color: rgb(51,102,255);">
|
|
|
<ac:inline-comment-marker ac:ref="a3837a37-8fe2-45cb-89a0-9a74980ede13">We should discuss this as a way to handle consistently in all workflows - note the GeneReviews and LiverTox non-TOC content is communicated in our system via source links, etc.</ac:inline-comment-marker>
|
|
|
</span>
|
|
|
</p>
|
|
|
</td>
|
|
|
<td colspan="1">
|
|
|
<br/>
|
|
|
</td>
|
|
|
<td colspan="1">
|
|
|
<br/>
|
|
|
</td>
|
|
|
<td colspan="1">
|
|
|
<ul>
|
|
|
<li>
|
|
|
<span style="color: rgb(0,0,255);">ids of other bookshelf content</span>
|
|
|
</li>
|
|
|
<li>
|
|
|
<span style="color: rgb(0,0,255);">hyperlinks</span>
|
|
|
</li>
|
|
|
<li>
|
|
|
<span style="color: rgb(0,0,255);">bold </span>
|
|
|
</li>
|
|
|
<li>
|
|
|
<span style="color: rgb(0,0,255);">italic</span>
|
|
|
</li>
|
|
|
</ul>
|
|
|
</td>
|
|
|
<td>N</td>
|
|
|
<td>
|
|
|
<span style="color: rgb(51,102,255);">N</span>
|
|
|
</td>
|
|
|
<td colspan="1">
|
|
|
<br/>
|
|
|
</td>
|
|
|
<td colspan="1">
|
|
|
<br/>
|
|
|
</td>
|
|
|
<td colspan="1">
|
|
|
<br/>
|
|
|
</td>
|
|
|
</tr>
|
|
|
</tbody>
|
|
|
</table>
|
|
|
<p>
|
|
|
<br/>
|
|
|
</p>
|
|
|
<p class="auto-cursor-target">
|
|
|
<br/>
|
|
|
</p>
|
|
|
<h2 class="auto-cursor-target">Book Part Metadata</h2>
|
|
|
<table class="wrapped">
|
|
|
<colgroup>
|
|
|
<col style="width: 368.0px;"/>
|
|
|
<col style="width: 170.0px;"/>
|
|
|
<col style="width: 169.0px;"/>
|
|
|
<col style="width: 165.0px;"/>
|
|
|
<col style="width: 91.0px;"/>
|
|
|
<col style="width: 101.0px;"/>
|
|
|
<col style="width: 93.0px;"/>
|
|
|
<col style="width: 97.0px;"/>
|
|
|
<col style="width: 88.0px;"/>
|
|
|
</colgroup>
|
|
|
<tbody>
|
|
|
<tr>
|
|
|
<th>metadata field / types</th>
|
|
|
<th colspan="1">subfields</th>
|
|
|
<th colspan="1">nested objects</th>
|
|
|
<th colspan="1">formatting</th>
|
|
|
<th>UI</th>
|
|
|
<th>spreadsheet</th>
|
|
|
<th colspan="1">tagged from word source</th>
|
|
|
<th colspan="1">tagged from pdf source</th>
|
|
|
<th colspan="1">tagged in xml source</th>
|
|
|
</tr>
|
|
|
<tr>
|
|
|
<td>
|
|
|
<p>abstract</p>
|
|
|
<ul>
|
|
|
<li>standard</li>
|
|
|
<li>structured</li>
|
|
|
<li>blurb</li>
|
|
|
<li>excerpt</li>
|
|
|
</ul>
|
|
|
<p>Note: an excerpt MAY not be tagged as an abstract in the metadata - it may be a content or section type in the body of the XML text that is used as an abstract for indexing in Books and PubMed. We do want to see this for QA of what will be sent to PubMed for indexing.</p>
|
|
|
</td>
|
|
|
<td colspan="1">
|
|
|
<ul>
|
|
|
<li>title</li>
|
|
|
<li>structured sections</li>
|
|
|
<li>paragraphs</li>
|
|
|
</ul>
|
|
|
</td>
|
|
|
<td colspan="1">
|
|
|
<ul>
|
|
|
<li>
|
|
|
<span style="color: rgb(51,102,255);">boxes</span>
|
|
|
</li>
|
|
|
<li>
|
|
|
<span style="color: rgb(51,102,255);">display quote</span>
|
|
|
</li>
|
|
|
<li>
|
|
|
<span style="color: rgb(51,102,255);">figures with labels and captions</span>
|
|
|
<ul>
|
|
|
<li>
|
|
|
<span style="color: rgb(51,102,255);">graphics</span>
|
|
|
</li>
|
|
|
<li>
|
|
|
<span style="color: rgb(51,102,255);">alternative versions (media, etc)</span>
|
|
|
</li>
|
|
|
<li>
|
|
|
<span style="color: rgb(51,102,255);">source attribution</span>
|
|
|
</li>
|
|
|
</ul>
|
|
|
</li>
|
|
|
<li>
|
|
|
<span style="color: rgb(51,102,255);">footnotes</span>
|
|
|
</li>
|
|
|
<li>
|
|
|
<span style="color: rgb(51,102,255);">preformat code</span>
|
|
|
</li>
|
|
|
<li>
|
|
|
<span style="color: rgb(51,102,255);">tables</span>
|
|
|
</li>
|
|
|
</ul>
|
|
|
<p>
|
|
|
<span style="color: rgb(51,102,255);">Note: we will not support the ability to add these via UI; if the XML has them from source, we would like in the UI to simply have a placeholder of "box here" or "table here"</span>
|
|
|
</p>
|
|
|
</td>
|
|
|
<td colspan="1">
|
|
|
<ul>
|
|
|
<li>bold</li>
|
|
|
<li>italic</li>
|
|
|
<li>underline</li>
|
|
|
<li>hyperlink</li>
|
|
|
<li>
|
|
|
<span style="color: rgb(0,0,0);">lists (bullet, number, alpha)</span>
|
|
|
</li>
|
|
|
</ul>
|
|
|
</td>
|
|
|
<td>Y</td>
|
|
|
<td>N</td>
|
|
|
<td colspan="1">
|
|
|
<span style="color: rgb(0,51,102);">varies</span>
|
|
|
</td>
|
|
|
<td colspan="1">varies</td>
|
|
|
<td colspan="1">
|
|
|
<span style="color: rgb(0,0,0);">varies</span>
|
|
|
</td>
|
|
|
</tr>
|
|
|
<tr>
|
|
|
<td colspan="1">
|
|
|
<p>book part ids </p>
|
|
|
<p>
|
|
|
<span style="color: rgb(255,0,0);">**** see ids list already provided ***</span>
|
|
|
</p>
|
|
|
</td>
|
|
|
<td colspan="1">
|
|
|
<br/>
|
|
|
</td>
|
|
|
<td colspan="1">
|
|
|
<br/>
|
|
|
</td>
|
|
|
<td colspan="1">
|
|
|
<br/>
|
|
|
</td>
|
|
|
<td colspan="1">Y</td>
|
|
|
<td colspan="1">N</td>
|
|
|
<td colspan="1">Y </td>
|
|
|
<td colspan="1">varies</td>
|
|
|
<td colspan="1">varies</td>
|
|
|
</tr>
|
|
|
<tr>
|
|
|
<td colspan="1">
|
|
|
<p>contributors</p>
|
|
|
<ul>
|
|
|
<li>author(s) - one or more<ul>
|
|
|
<li>given names, surname, suffix</li>
|
|
|
</ul>
|
|
|
</li>
|
|
|
<li>
|
|
|
<span style="color: rgb(0,0,255);">editor(s) - one or more</span>
|
|
|
<ul>
|
|
|
<li>
|
|
|
<span style="color: rgb(0,0,255);">given names, surnames, suffix</span>
|
|
|
</li>
|
|
|
</ul>
|
|
|
</li>
|
|
|
<li>
|
|
|
<span style="color: rgb(0,0,255);">organizations as authors - one or more</span>
|
|
|
<ul>
|
|
|
<li>
|
|
|
<span style="color: rgb(51,102,255);">collaborative authors part of organizational author</span>
|
|
|
</li>
|
|
|
<li>
|
|
|
<span style="color: rgb(51,102,255);">authors writing on behalf of the organization</span>
|
|
|
</li>
|
|
|
</ul>
|
|
|
</li>
|
|
|
<li>
|
|
|
<span style="color: rgb(51,102,255);">bios </span>
|
|
|
</li>
|
|
|
</ul>
|
|
|
</td>
|
|
|
<td colspan="1">
|
|
|
<ul>
|
|
|
<li>affiliations<ul>
|
|
|
<li>address</li>
|
|
|
<li>country</li>
|
|
|
<li>email</li>
|
|
|
<li>label and fn linked to author / editor</li>
|
|
|
<li>institution</li>
|
|
|
</ul>
|
|
|
</li>
|
|
|
<li>roles</li>
|
|
|
<li>degrees</li>
|
|
|
<li>corresponding author (Y / N)</li>
|
|
|
<li>
|
|
|
<span style="color: rgb(0,0,255);">bios</span>
|
|
|
<ul>
|
|
|
<li>
|
|
|
<span style="color: rgb(0,0,255);">sections</span>
|
|
|
</li>
|
|
|
<li>
|
|
|
<span style="color: rgb(0,0,255);">paragraph</span>
|
|
|
</li>
|
|
|
<li>
|
|
|
<span style="color: rgb(0,0,255);">figs / graphics</span>
|
|
|
</li>
|
|
|
</ul>
|
|
|
</li>
|
|
|
</ul>
|
|
|
</td>
|
|
|
<td colspan="1">
|
|
|
<br/>
|
|
|
</td>
|
|
|
<td colspan="1">
|
|
|
<ul>
|
|
|
<li>affiliations<ul>
|
|
|
<li>bold</li>
|
|
|
<li>italic</li>
|
|
|
<li>superscript</li>
|
|
|
<li>hyperlink</li>
|
|
|
</ul>
|
|
|
</li>
|
|
|
<li>
|
|
|
<span style="color: rgb(0,0,255);">bio</span>
|
|
|
<ul>
|
|
|
<li>
|
|
|
<span style="color: rgb(0,0,255);">bold</span>
|
|
|
</li>
|
|
|
<li>
|
|
|
<span style="color: rgb(0,0,255);">italic</span>
|
|
|
</li>
|
|
|
<li>
|
|
|
<span style="color: rgb(0,0,255);">hyperlink</span>
|
|
|
</li>
|
|
|
</ul>
|
|
|
</li>
|
|
|
</ul>
|
|
|
</td>
|
|
|
<td colspan="1">Y</td>
|
|
|
<td colspan="1">
|
|
|
<p>N</p>
|
|
|
<p>
|
|
|
<span style="color: rgb(0,0,255);">Note: for those rare fields and nested collaborative and on behalf of authors in blue, these would need to be input via Spreadsheet only. All others would be supported via UI</span>
|
|
|
</p>
|
|
|
</td>
|
|
|
<td colspan="1">Y</td>
|
|
|
<td colspan="1">varies</td>
|
|
|
<td colspan="1">Y</td>
|
|
|
</tr>
|
|
|
<tr>
|
|
|
<td colspan="1">custom metadata </td>
|
|
|
<td colspan="1">
|
|
|
<br/>
|
|
|
</td>
|
|
|
<td colspan="1">
|
|
|
<br/>
|
|
|
</td>
|
|
|
<td colspan="1">
|
|
|
<br/>
|
|
|
</td>
|
|
|
<td colspan="1">N</td>
|
|
|
<td colspan="1">
|
|
|
<p>Y</p>
|
|
|
<p>(fields / types to be developed in template)</p>
|
|
|
</td>
|
|
|
<td colspan="1">
|
|
|
<span style="color: rgb(0,51,102);">varies</span>
|
|
|
</td>
|
|
|
<td colspan="1">varies</td>
|
|
|
<td colspan="1">
|
|
|
<span style="color: rgb(0,0,0);">varies</span>
|
|
|
</td>
|
|
|
</tr>
|
|
|
<tr>
|
|
|
<td>
|
|
|
<p>funding information</p>
|
|
|
<ul>
|
|
|
<li>grant(s) / contract number(s)</li>
|
|
|
<li>funder(s)</li>
|
|
|
<li>principal awardee(s)</li>
|
|
|
<li>statement</li>
|
|
|
</ul>
|
|
|
<p>Note: funding information can be in the XML <strong>and / or</strong> provided via GrantHub data - see issue 129)</p>
|
|
|
</td>
|
|
|
<td colspan="1">
|
|
|
<ul>
|
|
|
<li>statement paragraph</li>
|
|
|
</ul>
|
|
|
</td>
|
|
|
<td colspan="1">
|
|
|
<br/>
|
|
|
</td>
|
|
|
<td colspan="1">
|
|
|
<ul>
|
|
|
<li>bold</li>
|
|
|
<li>italic</li>
|
|
|
<li>hyperlink</li>
|
|
|
</ul>
|
|
|
</td>
|
|
|
<td>Y</td>
|
|
|
<td>N</td>
|
|
|
<td colspan="1">
|
|
|
<p>N</p>
|
|
|
<p>(granthub data needs to be supported too)</p>
|
|
|
</td>
|
|
|
<td colspan="1">
|
|
|
<p>varies</p>
|
|
|
<p>(granthub data needs to be supported too)</p>
|
|
|
</td>
|
|
|
<td colspan="1">
|
|
|
<p>varies</p>
|
|
|
<p>(granthub data data needs to be supported too)</p>
|
|
|
</td>
|
|
|
</tr>
|
|
|
<tr>
|
|
|
<td colspan="1">
|
|
|
<p>keywords</p>
|
|
|
</td>
|
|
|
<td colspan="1">
|
|
|
<br/>
|
|
|
</td>
|
|
|
<td colspan="1">
|
|
|
<br/>
|
|
|
</td>
|
|
|
<td colspan="1">
|
|
|
<br/>
|
|
|
</td>
|
|
|
<td colspan="1">N</td>
|
|
|
<td colspan="1">
|
|
|
<p>Y</p>
|
|
|
<p>(fields / types to be developed in template)</p>
|
|
|
</td>
|
|
|
<td colspan="1">Y</td>
|
|
|
<td colspan="1">varies</td>
|
|
|
<td colspan="1">
|
|
|
<span style="color: rgb(0,0,0);">varies</span>
|
|
|
</td>
|
|
|
</tr>
|
|
|
<tr>
|
|
|
<td colspan="1">
|
|
|
<p>notes</p>
|
|
|
<ul>
|
|
|
<li>author notes</li>
|
|
|
<li>disclaimer</li>
|
|
|
<li>conflict of interest</li>
|
|
|
<li>edition statement</li>
|
|
|
<li>
|
|
|
<span style="color: rgb(0,0,255);">generic</span>
|
|
|
</li>
|
|
|
</ul>
|
|
|
<p>
|
|
|
<span style="color: rgb(0,0,255);">Question: can user enter a type if select generic and / or keep it blank?</span>
|
|
|
</p>
|
|
|
<p>
|
|
|
<span style="color: rgb(0,0,255);">Question: what if author note or conflict of interest is linked by footnotes in XML data to an author or title?</span>
|
|
|
</p>
|
|
|
</td>
|
|
|
<td colspan="1">
|
|
|
<ul>
|
|
|
<li>title</li>
|
|
|
<li>paragraph(s)</li>
|
|
|
</ul>
|
|
|
</td>
|
|
|
<td colspan="1">
|
|
|
<ul>
|
|
|
<li>
|
|
|
<span style="color: rgb(51,102,255);">boxes</span>
|
|
|
</li>
|
|
|
<li>
|
|
|
<span style="color: rgb(51,102,255);">figures with labels and captions</span>
|
|
|
<ul>
|
|
|
<li>
|
|
|
<span style="color: rgb(51,102,255);">graphics</span>
|
|
|
</li>
|
|
|
<li>
|
|
|
<span style="color: rgb(51,102,255);">alternative versions (media, etc)</span>
|
|
|
</li>
|
|
|
<li>
|
|
|
<span style="color: rgb(51,102,255);">source attribution</span>
|
|
|
</li>
|
|
|
</ul>
|
|
|
</li>
|
|
|
<li>
|
|
|
<span style="color: rgb(51,102,255);">footnotes</span>
|
|
|
</li>
|
|
|
<li>
|
|
|
<span style="color: rgb(51,102,255);">preformat code</span>
|
|
|
</li>
|
|
|
<li>
|
|
|
<span style="color: rgb(51,102,255);">tables</span>
|
|
|
</li>
|
|
|
</ul>
|
|
|
<p>
|
|
|
<span style="color: rgb(51,102,255);">Note: we will not support the ability to add these via UI; if the XML has them from source, we would like in the UI to simply have a placeholder of "box here" or "table here"</span>
|
|
|
</p>
|
|
|
</td>
|
|
|
<td colspan="1">
|
|
|
<ul>
|
|
|
<li>bold</li>
|
|
|
<li>italic</li>
|
|
|
<li>hyperlink</li>
|
|
|
<li>lists (bullet, numbered, alpha)</li>
|
|
|
</ul>
|
|
|
</td>
|
|
|
<td colspan="1">Y</td>
|
|
|
<td colspan="1">N</td>
|
|
|
<td colspan="1">
|
|
|
<span style="color: rgb(0,51,102);">only author notes</span>
|
|
|
</td>
|
|
|
<td colspan="1">Y</td>
|
|
|
<td colspan="1">Y</td>
|
|
|
</tr>
|
|
|
<tr>
|
|
|
<td colspan="1">
|
|
|
<p>permissions</p>
|
|
|
<ul>
|
|
|
<li>copyright<ul>
|
|
|
<li>statement </li>
|
|
|
<li>year</li>
|
|
|
</ul>
|
|
|
</li>
|
|
|
<li>license<ul>
|
|
|
<li>open access?</li>
|
|
|
<li>creative commons license type</li>
|
|
|
<li>license paragraph / statement</li>
|
|
|
</ul>
|
|
|
</li>
|
|
|
</ul>
|
|
|
</td>
|
|
|
<td colspan="1">
|
|
|
<br/>
|
|
|
</td>
|
|
|
<td colspan="1">
|
|
|
<br/>
|
|
|
</td>
|
|
|
<td colspan="1">
|
|
|
<ul>
|
|
|
<li>statements<ul>
|
|
|
<li>bold</li>
|
|
|
<li>italic</li>
|
|
|
<li>hyperlinks</li>
|
|
|
</ul>
|
|
|
</li>
|
|
|
</ul>
|
|
|
</td>
|
|
|
<td colspan="1">Y</td>
|
|
|
<td colspan="1">N</td>
|
|
|
<td colspan="1">N</td>
|
|
|
<td colspan="1">varies</td>
|
|
|
<td colspan="1">Y</td>
|
|
|
</tr>
|
|
|
<tr>
|
|
|
<td colspan="1">
|
|
|
<p>publication date and history</p>
|
|
|
<ul>
|
|
|
<li>publication date and type<ul>
|
|
|
<li>year, <span style="color: rgb(0,0,0);">month, day</span>
|
|
|
</li>
|
|
|
<li>
|
|
|
<span style="color: rgb(0,0,0);">print / electronic (if electronic is it an open range?)</span>
|
|
|
</li>
|
|
|
</ul>
|
|
|
</li>
|
|
|
<li>
|
|
|
<span style="color: rgb(0,0,0);">publication history</span>
|
|
|
<ul>
|
|
|
<li>created date</li>
|
|
|
<li>updated date</li>
|
|
|
<li>revised date</li>
|
|
|
<li>received</li>
|
|
|
<li>reviewed date</li>
|
|
|
<li>accepted date</li>
|
|
|
<li>
|
|
|
<span style="color: rgb(0,0,255);">other?</span>
|
|
|
</li>
|
|
|
</ul>
|
|
|
</li>
|
|
|
</ul>
|
|
|
<p>
|
|
|
<span style="color: rgb(0,0,255);">Note: in XML data there may be one-off unique types of history dates - would we be able to display these from the XML or note it as other?</span>
|
|
|
</p>
|
|
|
<p>
|
|
|
<span style="color: rgb(0,0,255);">Note: Word workflow only contains publication history, and only some types are supported; as discussed, this field should be editable (but how do that so it does not get overwritten next time XML is converted?)</span>
|
|
|
</p>
|
|
|
</td>
|
|
|
<td colspan="1">
|
|
|
<br/>
|
|
|
</td>
|
|
|
<td colspan="1">
|
|
|
<br/>
|
|
|
</td>
|
|
|
<td colspan="1">
|
|
|
<br/>
|
|
|
</td>
|
|
|
<td colspan="1">Y</td>
|
|
|
<td colspan="1">N</td>
|
|
|
<td colspan="1">varies</td>
|
|
|
<td colspan="1">varies</td>
|
|
|
<td colspan="1">Y</td>
|
|
|
</tr>
|
|
|
<tr>
|
|
|
<td colspan="1">
|
|
|
<p>publisher</p>
|
|
|
<ul>
|
|
|
<li>publisher name</li>
|
|
|
<li>publisher location <ul>
|
|
|
<li>city </li>
|
|
|
<li>state, province or country</li>
|
|
|
</ul>
|
|
|
</li>
|
|
|
</ul>
|
|
|
</td>
|
|
|
<td colspan="1">
|
|
|
<br/>
|
|
|
</td>
|
|
|
<td colspan="1">
|
|
|
<br/>
|
|
|
</td>
|
|
|
<td colspan="1">
|
|
|
<br/>
|
|
|
</td>
|
|
|
<td colspan="1">Y</td>
|
|
|
<td colspan="1">N</td>
|
|
|
<td colspan="1">N</td>
|
|
|
<td colspan="1">varies</td>
|
|
|
<td colspan="1">Y</td>
|
|
|
</tr>
|
|
|
<tr>
|
|
|
<td colspan="1">
|
|
|
<p>
|
|
|
<span style="color: rgb(0,0,255);">collection and</span> series information</p>
|
|
|
<ul>
|
|
|
<li>series name</li>
|
|
|
<li>volume number</li>
|
|
|
<li>issue number</li>
|
|
|
</ul>
|
|
|
<p>
|
|
|
<span style="color: rgb(0,0,255);">Note: series information must be taken from UI or source information since a book part may have a publisher series information that does NOT correspond to an ncbi book or collection; NCBI collection metadata must be included when sending a book part to pmc, but it should be copied from the Collection Metadata section to avoid errors and discrepancies</span>
|
|
|
</p>
|
|
|
</td>
|
|
|
<td colspan="1">
|
|
|
<br/>
|
|
|
</td>
|
|
|
<td colspan="1">
|
|
|
<br/>
|
|
|
</td>
|
|
|
<td colspan="1">
|
|
|
<br/>
|
|
|
</td>
|
|
|
<td colspan="1">Y</td>
|
|
|
<td colspan="1">N</td>
|
|
|
<td colspan="1">N</td>
|
|
|
<td colspan="1">varies</td>
|
|
|
<td colspan="1">
|
|
|
<span style="color: rgb(0,0,0);">varies</span>
|
|
|
</td>
|
|
|
</tr>
|
|
|
<tr>
|
|
|
<td colspan="1">subject groups</td>
|
|
|
<td colspan="1">
|
|
|
<br/>
|
|
|
</td>
|
|
|
<td colspan="1">
|
|
|
<br/>
|
|
|
</td>
|
|
|
<td colspan="1">
|
|
|
<br/>
|
|
|
</td>
|
|
|
<td colspan="1">N</td>
|
|
|
<td colspan="1">
|
|
|
<p>Y</p>
|
|
|
<p>(fields / types to be developed in template)</p>
|
|
|
</td>
|
|
|
<td colspan="1">
|
|
|
<u>
|
|
|
<ac:inline-comment-marker ac:ref="42752125-57e5-455d-a106-609bb00c1720">varies</ac:inline-comment-marker>
|
|
|
</u>
|
|
|
</td>
|
|
|
<td colspan="1">N</td>
|
|
|
<td colspan="1">
|
|
|
<span style="color: rgb(0,0,0);">varies</span>
|
|
|
</td>
|
|
|
</tr>
|
|
|
<tr>
|
|
|
<td colspan="1">
|
|
|
<p>
|
|
|
<span style="color: rgb(51,102,255);">suggested citation</span>
|
|
|
</p>
|
|
|
<p>
|
|
|
<span style="color: rgb(51,102,255);">Note: we do not want to display suggested citations in UI to avoid confusion. When we discuss PDF workflow we need to discuss use case of funded investigator uploading a funded chapter and having the ability to include a book citation for it, which would go to PDF data supplier to tag properly in XML - this is separate from a supported metadata field though</span>
|
|
|
</p>
|
|
|
<p>
|
|
|
<br/>
|
|
|
</p>
|
|
|
</td>
|
|
|
<td colspan="1">
|
|
|
<br/>
|
|
|
</td>
|
|
|
<td colspan="1">
|
|
|
<br/>
|
|
|
</td>
|
|
|
<td colspan="1">
|
|
|
<br/>
|
|
|
</td>
|
|
|
<td colspan="1">N</td>
|
|
|
<td colspan="1">
|
|
|
<span style="color: rgb(51,102,255);">N</span>
|
|
|
</td>
|
|
|
<td colspan="1">N</td>
|
|
|
<td colspan="1">
|
|
|
<span style="color: rgb(0,0,0);">varies </span>
|
|
|
</td>
|
|
|
<td colspan="1">Y</td>
|
|
|
</tr>
|
|
|
<tr>
|
|
|
<td>
|
|
|
<p>title and edition information</p>
|
|
|
<ul>
|
|
|
<li>main title</li>
|
|
|
<li>subtitle(s) - one or more<ul>
|
|
|
<li>subtitle in text</li>
|
|
|
<li>
|
|
|
<span style="color: rgb(0,0,0);">version</span>
|
|
|
</li>
|
|
|
</ul>
|
|
|
</li>
|
|
|
<li>
|
|
|
<span style="color: rgb(51,102,255);">alternative title</span>
|
|
|
<br/>
|
|
|
<ul>
|
|
|
<li>
|
|
|
<span style="color: rgb(51,102,255);">short</span>
|
|
|
</li>
|
|
|
<li>
|
|
|
<span style="color: rgb(51,102,255);">synonyms</span>
|
|
|
</li>
|
|
|
<li>
|
|
|
<span style="color: rgb(51,102,255);">pdf running header</span>
|
|
|
</li>
|
|
|
</ul>
|
|
|
</li>
|
|
|
</ul>
|
|
|
</td>
|
|
|
<td colspan="1">
|
|
|
<br/>
|
|
|
</td>
|
|
|
<td colspan="1">
|
|
|
<br/>
|
|
|
</td>
|
|
|
<td colspan="1">
|
|
|
<ul>
|
|
|
<li>italic</li>
|
|
|
<li>subscript</li>
|
|
|
<li>superscript</li>
|
|
|
<li>small cap</li>
|
|
|
</ul>
|
|
|
</td>
|
|
|
<td>
|
|
|
<p>Y</p>
|
|
|
<p>
|
|
|
<span style="color: rgb(0,0,255);">Note: Those in blue are not as important to display in UI although would be nice</span>
|
|
|
</p>
|
|
|
</td>
|
|
|
<td>N</td>
|
|
|
<td colspan="1">Y</td>
|
|
|
<td colspan="1">
|
|
|
<span style="color: rgb(0,0,0);">varies</span>
|
|
|
</td>
|
|
|
<td colspan="1">Y</td>
|
|
|
</tr>
|
|
|
<tr>
|
|
|
<td colspan="1">
|
|
|
<p>
|
|
|
<span style="color: rgb(51,102,255);">link groups</span>
|
|
|
</p>
|
|
|
<ul>
|
|
|
<li>
|
|
|
<span style="color: rgb(51,102,255);">supplementary files</span>
|
|
|
</li>
|
|
|
<li>
|
|
|
<span style="color: rgb(51,102,255);">link to source version url (if no doi)</span>
|
|
|
</li>
|
|
|
<li>
|
|
|
<span style="color: rgb(51,102,255);">related publications</span>
|
|
|
</li>
|
|
|
</ul>
|
|
|
<p>
|
|
|
<br/>
|
|
|
</p>
|
|
|
<p>
|
|
|
<span style="color: rgb(51,102,255);">Note: book part link groups are usually a section in body, but see notes for link groups in book metadata - rare cases where this is also in metadata in legacy materials</span>
|
|
|
</p>
|
|
|
</td>
|
|
|
<td colspan="1">
|
|
|
<br/>
|
|
|
</td>
|
|
|
<td colspan="1">
|
|
|
<br/>
|
|
|
</td>
|
|
|
<td colspan="1">
|
|
|
<ul>
|
|
|
<li>
|
|
|
<span style="color: rgb(0,0,255);">ids of other bookshelf content</span>
|
|
|
</li>
|
|
|
<li>
|
|
|
<span style="color: rgb(0,0,255);">hyperlinks</span>
|
|
|
</li>
|
|
|
<li>
|
|
|
<span style="color: rgb(0,0,255);">bold </span>
|
|
|
</li>
|
|
|
<li>
|
|
|
<span style="color: rgb(0,0,255);">italic</span>
|
|
|
</li>
|
|
|
</ul>
|
|
|
</td>
|
|
|
<td colspan="1">N</td>
|
|
|
<td colspan="1">
|
|
|
<span style="color: rgb(51,102,255);">N</span>
|
|
|
</td>
|
|
|
<td colspan="1">
|
|
|
<br/>
|
|
|
</td>
|
|
|
<td colspan="1">
|
|
|
<br/>
|
|
|
</td>
|
|
|
<td colspan="1">
|
|
|
<br/>
|
|
|
</td>
|
|
|
</tr>
|
|
|
<tr>
|
|
|
<td colspan="1">
|
|
|
<p>
|
|
|
<span style="color: rgb(0,0,255);">Other</span>
|
|
|
</p>
|
|
|
<p>
|
|
|
<span style="color: rgb(0,0,255);">first and last page </span>
|
|
|
</p>
|
|
|
<p>
|
|
|
<span style="color: rgb(0,0,255);">Note: may be some very rare others but not important to show in UI</span>
|
|
|
</p>
|
|
|
</td>
|
|
|
<td colspan="1">
|
|
|
<br/>
|
|
|
</td>
|
|
|
<td colspan="1">
|
|
|
<br/>
|
|
|
</td>
|
|
|
<td colspan="1">
|
|
|
<br/>
|
|
|
</td>
|
|
|
<td colspan="1">N</td>
|
|
|
<td colspan="1">N</td>
|
|
|
<td colspan="1">N</td>
|
|
|
<td colspan="1">N</td>
|
|
|
<td colspan="1">Y</td>
|
|
|
</tr>
|
|
|
</tbody>
|
|
|
</table>
|
|
|
<p class="auto-cursor-target">
|
|
|
<br/>
|
|
|
</p>
|
|
|
<h2 class="auto-cursor-target">Collection Metadata</h2>
|
|
|
<table class="wrapped">
|
|
|
<colgroup>
|
|
|
<col style="width: 451.0px;"/>
|
|
|
<col style="width: 183.0px;"/>
|
|
|
<col style="width: 177.0px;"/>
|
|
|
<col style="width: 111.0px;"/>
|
|
|
<col style="width: 36.0px;"/>
|
|
|
<col style="width: 101.0px;"/>
|
|
|
<col style="width: 101.0px;"/>
|
|
|
<col style="width: 95.0px;"/>
|
|
|
<col style="width: 87.0px;"/>
|
|
|
</colgroup>
|
|
|
<tbody>
|
|
|
<tr>
|
|
|
<th>metadata field / types</th>
|
|
|
<th colspan="1">subfields</th>
|
|
|
<th colspan="1">nested objects</th>
|
|
|
<th colspan="1">formatting</th>
|
|
|
<th>UI</th>
|
|
|
<th>spreadsheet</th>
|
|
|
<th colspan="1">tagged from word source</th>
|
|
|
<th colspan="1">tagged from pdf source</th>
|
|
|
<th colspan="1">tagged in xml source</th>
|
|
|
</tr>
|
|
|
<tr>
|
|
|
<td>
|
|
|
<p>abstract</p>
|
|
|
</td>
|
|
|
<td colspan="1">
|
|
|
<ul>
|
|
|
<li>title</li>
|
|
|
<li>structured sections</li>
|
|
|
<li>
|
|
|
<ac:inline-comment-marker ac:ref="0e0441e7-cb10-4943-b7d6-3d530d8ad25f">paragraphs</ac:inline-comment-marker>
|
|
|
</li>
|
|
|
</ul>
|
|
|
</td>
|
|
|
<td colspan="1">
|
|
|
<br/>
|
|
|
</td>
|
|
|
<td colspan="1">
|
|
|
<ul>
|
|
|
<li>bold</li>
|
|
|
<li>italic</li>
|
|
|
<li>underline</li>
|
|
|
<li>hyperlink</li>
|
|
|
<li>lists (bullet, number, alpha)</li>
|
|
|
</ul>
|
|
|
</td>
|
|
|
<td>Y</td>
|
|
|
<td>N</td>
|
|
|
<td colspan="1">N</td>
|
|
|
<td colspan="1">N</td>
|
|
|
<td colspan="1">
|
|
|
<span style="color: rgb(0,0,0);">N</span>
|
|
|
</td>
|
|
|
</tr>
|
|
|
<tr>
|
|
|
<td colspan="1">
|
|
|
<p>collection ids </p>
|
|
|
<p>
|
|
|
<span style="color: rgb(255,0,0);">**** see ids list already provided *** </span>
|
|
|
</p>
|
|
|
</td>
|
|
|
<td colspan="1">
|
|
|
<br/>
|
|
|
</td>
|
|
|
<td colspan="1">
|
|
|
<br/>
|
|
|
</td>
|
|
|
<td colspan="1">
|
|
|
<br/>
|
|
|
</td>
|
|
|
<td colspan="1">Y</td>
|
|
|
<td colspan="1">N</td>
|
|
|
<td colspan="1">N</td>
|
|
|
<td colspan="1">varies</td>
|
|
|
<td colspan="1">varies</td>
|
|
|
</tr>
|
|
|
<tr>
|
|
|
<td colspan="1">
|
|
|
<p>contributors</p>
|
|
|
<ul>
|
|
|
<li>series editor(s) - one or more<ul>
|
|
|
<li>given names, surnames, suffix</li>
|
|
|
</ul>
|
|
|
</li>
|
|
|
<li>organizations as authors - one or more</li>
|
|
|
</ul>
|
|
|
</td>
|
|
|
<td colspan="1">
|
|
|
<ul>
|
|
|
<li>affiliations<ul>
|
|
|
<li>address</li>
|
|
|
<li>country</li>
|
|
|
<li>email</li>
|
|
|
<li>label and fn linked to author / editor</li>
|
|
|
<li>institution</li>
|
|
|
</ul>
|
|
|
</li>
|
|
|
<li>roles</li>
|
|
|
<li>degrees</li>
|
|
|
<li>corresponding author (Y / N)</li>
|
|
|
</ul>
|
|
|
</td>
|
|
|
<td colspan="1">
|
|
|
<br/>
|
|
|
</td>
|
|
|
<td colspan="1">
|
|
|
<ul>
|
|
|
<li>affiliations<ul>
|
|
|
<li>bold</li>
|
|
|
<li>italic</li>
|
|
|
<li>superscript</li>
|
|
|
<li>hyperlink</li>
|
|
|
</ul>
|
|
|
</li>
|
|
|
</ul>
|
|
|
</td>
|
|
|
<td colspan="1">Y</td>
|
|
|
<td colspan="1">N</td>
|
|
|
<td colspan="1">N</td>
|
|
|
<td colspan="1">varies</td>
|
|
|
<td colspan="1">Y</td>
|
|
|
</tr>
|
|
|
<tr>
|
|
|
<td colspan="1">custom metadata </td>
|
|
|
<td colspan="1">
|
|
|
<br/>
|
|
|
</td>
|
|
|
<td colspan="1">
|
|
|
<br/>
|
|
|
</td>
|
|
|
<td colspan="1">
|
|
|
<br/>
|
|
|
</td>
|
|
|
<td colspan="1">N</td>
|
|
|
<td colspan="1">
|
|
|
<p>Y</p>
|
|
|
<p>(fields / types to be developed in template)</p>
|
|
|
</td>
|
|
|
<td colspan="1">N</td>
|
|
|
<td colspan="1">N</td>
|
|
|
<td colspan="1">
|
|
|
<span style="color: rgb(0,0,0);">N</span>
|
|
|
</td>
|
|
|
</tr>
|
|
|
<tr>
|
|
|
<td>
|
|
|
<p>
|
|
|
<span style="color: rgb(0,0,0);">funding information</span>
|
|
|
</p>
|
|
|
<ul>
|
|
|
<li>grant / contract number</li>
|
|
|
<li>funder</li>
|
|
|
</ul>
|
|
|
</td>
|
|
|
<td colspan="1">
|
|
|
<br/>
|
|
|
</td>
|
|
|
<td colspan="1">
|
|
|
<br/>
|
|
|
</td>
|
|
|
<td colspan="1">
|
|
|
<br/>
|
|
|
</td>
|
|
|
<td>Y</td>
|
|
|
<td>N</td>
|
|
|
<td colspan="1">
|
|
|
<p>N</p>
|
|
|
<p>
|
|
|
<br/>
|
|
|
</p>
|
|
|
</td>
|
|
|
<td colspan="1">
|
|
|
<p>N</p>
|
|
|
</td>
|
|
|
<td colspan="1">
|
|
|
<p>N</p>
|
|
|
</td>
|
|
|
</tr>
|
|
|
<tr>
|
|
|
<td colspan="1">
|
|
|
<p>notes</p>
|
|
|
<ul>
|
|
|
<li>disclaimer</li>
|
|
|
<li>
|
|
|
<span style="color: rgb(0,0,255);">generic</span>
|
|
|
</li>
|
|
|
</ul>
|
|
|
<p>
|
|
|
<span style="color: rgb(0,0,255);">Question: can user enter a type if select generic and / or keep it blank?</span>
|
|
|
</p>
|
|
|
<p>
|
|
|
<br/>
|
|
|
</p>
|
|
|
</td>
|
|
|
<td colspan="1">
|
|
|
<ul>
|
|
|
<li>title</li>
|
|
|
<li>paragraph(s)</li>
|
|
|
</ul>
|
|
|
</td>
|
|
|
<td colspan="1">
|
|
|
<p>
|
|
|
<br/>
|
|
|
</p>
|
|
|
</td>
|
|
|
<td colspan="1">
|
|
|
<ul>
|
|
|
<li>bold</li>
|
|
|
<li>italic</li>
|
|
|
<li>hyperlink</li>
|
|
|
</ul>
|
|
|
</td>
|
|
|
<td colspan="1">Y</td>
|
|
|
<td colspan="1">N</td>
|
|
|
<td colspan="1">N</td>
|
|
|
<td colspan="1">N</td>
|
|
|
<td colspan="1">N</td>
|
|
|
</tr>
|
|
|
<tr>
|
|
|
<td colspan="1">
|
|
|
<p>permissions</p>
|
|
|
<ul>
|
|
|
<li>copyright<ul>
|
|
|
<li>statement </li>
|
|
|
<li>year</li>
|
|
|
</ul>
|
|
|
</li>
|
|
|
<li>license<ul>
|
|
|
<li>open access?</li>
|
|
|
<li>creative commons license type</li>
|
|
|
<li>license paragraph / statement</li>
|
|
|
</ul>
|
|
|
</li>
|
|
|
</ul>
|
|
|
</td>
|
|
|
<td colspan="1">
|
|
|
<br/>
|
|
|
</td>
|
|
|
<td colspan="1">
|
|
|
<br/>
|
|
|
</td>
|
|
|
<td colspan="1">
|
|
|
<ul>
|
|
|
<li>statements<ul>
|
|
|
<li>bold</li>
|
|
|
<li>italic</li>
|
|
|
<li>hyperlinks</li>
|
|
|
</ul>
|
|
|
</li>
|
|
|
</ul>
|
|
|
</td>
|
|
|
<td colspan="1">Y</td>
|
|
|
<td colspan="1">N</td>
|
|
|
<td colspan="1">N</td>
|
|
|
<td colspan="1">N</td>
|
|
|
<td colspan="1">N</td>
|
|
|
</tr>
|
|
|
<tr>
|
|
|
<td colspan="1">
|
|
|
<p>publication date</p>
|
|
|
<ul>
|
|
|
<li>year, <span style="color: rgb(0,0,0);">month, day</span>
|
|
|
</li>
|
|
|
<li>
|
|
|
<span style="color: rgb(0,0,0);">print / electronic (if electronic is it an open range? or start and end dates)</span>
|
|
|
</li>
|
|
|
</ul>
|
|
|
</td>
|
|
|
<td colspan="1">
|
|
|
<br/>
|
|
|
</td>
|
|
|
<td colspan="1">
|
|
|
<br/>
|
|
|
</td>
|
|
|
<td colspan="1">
|
|
|
<br/>
|
|
|
</td>
|
|
|
<td colspan="1">Y</td>
|
|
|
<td colspan="1">N</td>
|
|
|
<td colspan="1">N</td>
|
|
|
<td colspan="1">N</td>
|
|
|
<td colspan="1">N</td>
|
|
|
</tr>
|
|
|
<tr>
|
|
|
<td colspan="1">
|
|
|
<p>publisher</p>
|
|
|
<ul>
|
|
|
<li>publisher name</li>
|
|
|
<li>publisher location <ul>
|
|
|
<li>city </li>
|
|
|
<li>state, province or country</li>
|
|
|
</ul>
|
|
|
</li>
|
|
|
</ul>
|
|
|
</td>
|
|
|
<td colspan="1">
|
|
|
<br/>
|
|
|
</td>
|
|
|
<td colspan="1">
|
|
|
<br/>
|
|
|
</td>
|
|
|
<td colspan="1">
|
|
|
<br/>
|
|
|
</td>
|
|
|
<td colspan="1">Y</td>
|
|
|
<td colspan="1">N</td>
|
|
|
<td colspan="1">N</td>
|
|
|
<td colspan="1">varies</td>
|
|
|
<td colspan="1">Y</td>
|
|
|
</tr>
|
|
|
<tr>
|
|
|
<td colspan="1">
|
|
|
<p>collection information</p>
|
|
|
<ul>
|
|
|
<li>collection title</li>
|
|
|
<li>type of collection (medline indexed series, published series, funder collection)</li>
|
|
|
</ul>
|
|
|
<p>
|
|
|
<span style="color: rgb(51,102,255);">Note: see notes for collection metadata copied over into book and book part metadata</span>
|
|
|
</p>
|
|
|
</td>
|
|
|
<td colspan="1">
|
|
|
<br/>
|
|
|
</td>
|
|
|
<td colspan="1">
|
|
|
<br/>
|
|
|
</td>
|
|
|
<td colspan="1">
|
|
|
<br/>
|
|
|
</td>
|
|
|
<td colspan="1">Y</td>
|
|
|
<td colspan="1">N</td>
|
|
|
<td colspan="1">N</td>
|
|
|
<td colspan="1">N</td>
|
|
|
<td colspan="1">
|
|
|
<span style="color: rgb(0,0,0);">N</span>
|
|
|
</td>
|
|
|
</tr>
|
|
|
<tr>
|
|
|
<td>
|
|
|
<p>
|
|
|
<span style="color: rgb(51,102,255);">link groups</span>
|
|
|
</p>
|
|
|
<ul>
|
|
|
<li>
|
|
|
<span style="color: rgb(51,102,255);">supplementary files</span>
|
|
|
</li>
|
|
|
<li>
|
|
|
<span style="color: rgb(51,102,255);">link to source version url (if no doi)</span>
|
|
|
</li>
|
|
|
<li>
|
|
|
<span style="color: rgb(51,102,255);">related publications</span>
|
|
|
</li>
|
|
|
</ul>
|
|
|
<p>
|
|
|
<br/>
|
|
|
</p>
|
|
|
<p>
|
|
|
<span style="color: rgb(51,102,255);">Note: link groups are USUALLY set as book settings rather than contained in metadata, but we have a few legacy cases that they are in metadata (but do not need to show in UI)</span>
|
|
|
</p>
|
|
|
<p>
|
|
|
<span style="color: rgb(51,102,255);">We should discuss this as a way to handle consistently in all workflows - note the GeneReviews and LiverTox non-TOC content is communicated in our system via source links, etc.</span>
|
|
|
</p>
|
|
|
</td>
|
|
|
<td colspan="1">
|
|
|
<br/>
|
|
|
</td>
|
|
|
<td colspan="1">
|
|
|
<br/>
|
|
|
</td>
|
|
|
<td colspan="1">
|
|
|
<ul>
|
|
|
<li>
|
|
|
<span style="color: rgb(0,0,255);">ids of other bookshelf content</span>
|
|
|
</li>
|
|
|
<li>
|
|
|
<span style="color: rgb(0,0,255);">hyperlinks</span>
|
|
|
</li>
|
|
|
<li>
|
|
|
<span style="color: rgb(0,0,255);">bold </span>
|
|
|
</li>
|
|
|
<li>
|
|
|
<span style="color: rgb(0,0,255);">italic</span>
|
|
|
</li>
|
|
|
</ul>
|
|
|
</td>
|
|
|
<td>N</td>
|
|
|
<td>
|
|
|
<span style="color: rgb(51,102,255);">N</span>
|
|
|
</td>
|
|
|
<td colspan="1">
|
|
|
<br/>
|
|
|
</td>
|
|
|
<td colspan="1">
|
|
|
<br/>
|
|
|
</td>
|
|
|
<td colspan="1">
|
|
|
<br/>
|
|
|
</td>
|
|
|
</tr>
|
|
|
</tbody>
|
|
|
</table>
|
|
|
<p class="auto-cursor-target">
|
|
|
<u>
|
|
|
<strong>Key</strong>
|
|
|
</u>
|
|
|
</p>
|
|
|
<ul>
|
|
|
<li class="auto-cursor-target">
|
|
|
<span style="color: rgb(51,102,255);">blue - may need to be discussed - denotes some uncertainty or more information is needed, etc.</span>
|
|
|
</li>
|
|
|
<li class="auto-cursor-target">
|
|
|
<span style="color: rgb(255,0,0);">red - information provided elsewhere</span>
|
|
|
</li>
|
|
|
</ul>
|
|
|
<p>
|
|
|
<u>
|
|
|
<strong>
|
|
|
<span style="color: rgb(0,51,102);">Definitions:</span>
|
|
|
</strong>
|
|
|
</u>
|
|
|
</p>
|
|
|
<ul>
|
|
|
<li>UI - will display in UI</li>
|
|
|
<li>speadsheet - only populated and viewable in spreadsheet</li>
|
|
|
<li>varies - sometimes is in source(s), and sometimes not in source(s)</li>
|
|
|
</ul>
|
|
|
<p>
|
|
|
<u>
|
|
|
<strong>Assumptions:</strong>
|
|
|
</u>
|
|
|
</p>
|
|
|
<ul>
|
|
|
<li>In cases where it varies if a metadata is contained in source or not, at time of organization setup, Bookshelf staff can create custom templates defining which fields are editable or not (per organization's workflow <span style="color: rgb(0,0,255);">AND collection(s)</span>)</li>
|
|
|
<li>If a field is set as editable in UI, this means that it is what will be sent to NCBI for conversion and load to pmc - so NCBI and Orgs must be disciplined at setup in defining their metadata templates</li>
|
|
|
<li>Testing and development may introduce some one-off new fields or issues with organization, types, understaning of in source or not, etc ... there was A LOT of data to try to organize</li>
|
|
|
</ul>
|
|
|
<p>
|
|
|
<br/>
|
|
|
</p>
|
|
|
<p>
|
|
|
<br/>
|
|
|
</p> |
|
|
\ No newline at end of file |