.dockerignore

+**/node_modules

.eslintignore

 **/_build
 **/node_modules
 **/coverage
+**/dist
 packages/styleguide/styleguide

.gitignore

@@ -3,6 +3,8 @@ coverage
 *.log
 coverage/
 uploads/
+dist/
+docs/styleguide
 # Created by https://www.gitignore.io/api/osx,linux
 
 ### Linux ###
@@ -28,35 +30,6 @@ uploads/
 # Icon must end with two \r
 Icon
 
-
-# Thumbnails
-._*
-
-# Files that might appear in the root of a volume
-.DocumentRevisions-V100
-.fseventsd
-.Spotlight-V100
-.TemporaryItems
-.Trashes
-.VolumeIcon.icns
-.com.apple.timemachine.donotpresent
-
-# Directories potentially created on remote AFP share
-.AppleDB
-.AppleDesktop
-Network Trash Folder
-Temporary Items
-.apdisk
-
-# End of https://www.gitignore.io/api/osx,linux
-*.DS_Store
-.AppleDouble
-.LSOverride
-
-# Icon must end with two \r
-Icon
-
-
 # Thumbnails
 ._*
 

.gitlab-ci.yml

 variables:
   IMAGE_ORG: pubsweet
   IMAGE_NAME: pubsweet
-  BASE_DOMAIN: gateway.ps.elifesciences.yld.io
-  CONFIGURATION_REPOSITORY: https://gitlab.coko.foundation/pubsweet/deployment-config.git
+  DOCKER_TLS_CERTDIR: "/certs"
 
 stages:
   - build
-  - audit
   - test
   - review
-  - staging
+  - audit
   - production
-  - demo
 
 build:
-  image: docker:latest
+  image: docker:19.03.1
+  services:
+    - docker:19.03.1-dind
   stage: build
   except:
     - tags
@@ -25,10 +24,43 @@ build:
     - docker login -u $DOCKERHUB_USERNAME -p $DOCKERHUB_PASSWORD
     - echo "Ignore warning! Cannot perform an interactive login from a non TTY device"
     - docker push $IMAGE_ORG/$IMAGE_NAME:$CI_COMMIT_SHA
+    # - echo "Building XSweet job runner image"
+    # - docker build -t pubsweet/job-xsweet:$CI_COMMIT_SHA components/server/job-xsweet
+    # - docker push pubsweet/job-xsweet:$CI_COMMIT_SHA
 
-audit: 
+pages:
   image: $IMAGE_ORG/$IMAGE_NAME:$CI_COMMIT_SHA
-  stage: test
+  stage: production
+  script:
+    - cd ${HOME}
+    - yarn styleguide:build
+    - cp -R docs/styleguide/ /builds/pubsweet/pubsweet/public/
+  artifacts:
+    paths:
+      - public/
+  only:
+    - master # this job will affect only the 'master' branch
+
+pages:review:
+  image: $IMAGE_ORG/$IMAGE_NAME:$CI_COMMIT_SHA
+  stage: review
+  script:
+    - cd ${HOME}
+    - yarn styleguide:build
+    - cp -R docs/styleguide/ /builds/pubsweet/pubsweet/review/
+  artifacts:
+    paths:
+      - review/
+  except:
+  - master
+  environment:
+    name: review/$CI_COMMIT_REF_NAME
+    url: http://$CI_PROJECT_NAMESPACE.coko.foundation/-/$CI_PROJECT_NAME/-/jobs/$CI_JOB_ID/artifacts/review/index.html
+
+audit:
+  image: $IMAGE_ORG/$IMAGE_NAME:$CI_COMMIT_SHA
+  stage: audit
+  allow_failure: true
   except:
     - tags
   variables:
@@ -36,7 +68,7 @@ audit:
   script:
     - cd ${HOME}
     - yarn audit
-  
+
 lint:style:
   image: $IMAGE_ORG/$IMAGE_NAME:$CI_COMMIT_SHA
   stage: test
@@ -69,7 +101,7 @@ lint:json:
   script:
     - cd ${HOME}
     - yarn lint:json
-  
+
 lint:commits:
    image: $IMAGE_ORG/$IMAGE_NAME:$CI_COMMIT_SHA
    stage: test
@@ -101,103 +133,27 @@ test:
     # specify host here else it confuses the linked postgres image
     - PGHOST=postgres yarn test
 
-# if tests pass we will push latest, labelled with current commit hash
-push:latest:
-  image: docker:latest
-  stage: staging
-  script:
-    - if [ -z "$DOCKERHUB_USERNAME" ] || [ -z "$DOCKERHUB_PASSWORD" ]; then echo "Not pushing" && exit 0; fi
-    - docker login -u $DOCKERHUB_USERNAME -p $DOCKERHUB_PASSWORD
-    - echo "Ignore warning! Cannot perform an interactive login from a non TTY device"
-    - docker build -t $IMAGE_ORG/$IMAGE_NAME:latest --label COMMIT_SHA=$CI_COMMIT_SHA .
-    - docker push $IMAGE_ORG/$IMAGE_NAME:latest
-  only:
-    - master
-  except:
-    - tags
-
-# -----------------------------------------------
-# ui --------------------------------------------
-# -----------------------------------------------
-
-review:ui:
-  image: pubsweet/deployer:latest
-  stage: review
-  variables:
-    PACKAGE_NAME: ui
-  environment:
-    name: $PACKAGE_NAME/review/$CI_COMMIT_REF_NAME
-    # !! kube-lego will fail if domain > 63 chars
-    url: "http://${CI_ENVIRONMENT_SLUG}.${BASE_DOMAIN}"
-    on_stop: stop_review:ui
-  except:
-    - master
-    - tags
-  script:
-    - source deploy.sh
-    - create_deployment
-
-stop_review:ui:
-  image: pubsweet/deployer:latest
-  stage: review
-  variables:
-    PACKAGE_NAME: ui
-    GIT_STRATEGY: none
-  environment:
-    name: $PACKAGE_NAME/review/$CI_COMMIT_REF_NAME
-    action: stop
-  when: manual
-  except:
-    - master
-    - tags
-  script:
-    - source deploy.sh
-    - delete_deployment
-
-staging:ui:
-  image: pubsweet/deployer:latest
-  stage: staging
-  variables:
-    PACKAGE_NAME: ui
-  environment:
-    name: $PACKAGE_NAME/staging
-    url: "https://${CI_ENVIRONMENT_SLUG}.${BASE_DOMAIN}"
-  only:
-    - master
-  except:
-    - tags
-  script:
-    - source deploy.sh
-    - create_deployment
-
-production:ui:
-  image: pubsweet/deployer:latest
-  stage: production
-  variables:
-    PACKAGE_NAME: ui
-  environment:
-    name: $PACKAGE_NAME/production
-    url: "https://${CI_ENVIRONMENT_SLUG}.${BASE_DOMAIN}"
-  when: manual
-  only:
-    - master
-  except:
-    - tags
-  script:
-    - source deploy.sh
-    - create_deployment
-
-demo:ui:
-  image: pubsweet/deployer:latest
-  stage: demo
-  variables:
-    PACKAGE_NAME: ui
-  environment:
-    name: $PACKAGE_NAME/demo
-    url: "https://${CI_ENVIRONMENT_SLUG}.${BASE_DOMAIN}"
-  when: manual
-  except:
-    - tags
-  script:
-    - source deploy.sh
-    - create_deployment
+# Reenable this once GitLab docker networking is sorted:
+# https://gitlab.com/gitlab-org/gitlab-runner/merge_requests/1041
+# test:job-xsweet:
+#   image: $IMAGE_ORG/$IMAGE_NAME:$CI_COMMIT_SHA
+#   stage: test
+#   variables:
+#     # don't clone repo as image already has it
+#     GIT_STRATEGY: none
+#     # setup data for postgres image
+#     POSTGRES_USER: test
+#     POSTGRES_PASSWORD: pw
+#     # connection details for tests
+#     PGUSER: test
+#     PGPASSWORD: pw
+#     NODE_ENV: test
+#     DATABASE_URL: postgres://test:pw@postgres/test
+#   services:
+#     - postgres
+#     - pubsweet/job-xsweet
+#   except:
+#     - tags
+#   script:
+#     - cd ${HOME}
+#     - PGHOST=postgres cd components/server/job-xsweet && yarn jest --testRegex test/standaloneXsweetTest.js

.gitlab/issue_templates/Bug.md

+**Describe the bug**
+
+...
+
+**Steps To Reproduce**
+
+**Expected behavior**
+
+...
+
+**Screenshots**
+
+If applicable, add screenshots to help explain your problem.
+
+**Device, Operating System and Browser**
+

.gitlab/issue_templates/Feature Request.md

+[Template for request for comments (RFC) on feature proposals]
+
+# RFC: Feature proposal: [Title]
+
+## Context
+
+[Give the necessary context for your proposal. For example, what problem will this feature solve for users? What are the use cases, benefits, and goals?]
+
+## Proposal
+
+[A precise statement of the proposed feature.]
+
+## Design
+
+[Include sketch or wireframes of the UI changes necessary for this feature]
+
+## Implementation (if applicable)
+
+[A description of the steps to implement the feature.]
+
+## Alternative approaches (if applicable)
+
+[Include any alternatives to meet this use case.]
+
+## Open issues (if applicable)
+
+[Links to and a discussion of related issues, if applicable.]

.gitlab/merge_request_templates/Default.md

+#### Background
+
+What does this MR do?
+
+#### Any relevant issue
+
+Please use the phrase 'closes' if it will close an issue.
+
+#### How has this been tested?
+
+**Reviewers** ensure that these test requirements are also reviewed.
+
+Please indicate the need for this change to be tested. If not please justify, if so then at what levels. 
+
+- [ ] Unit / Integration tests
+- [ ] Browser tests
+- [ ] E2E tests
+
+#### Documentation updates
+
+- [ ] New features to document
+- [ ] Updating existing documentation if needed
+

.lintstagedrc

 {
   linters: {"*.{js,jsx}": ["prettier --write", "eslint --fix", "git add"],
-  "*.{css,scss}": ["prettier --write", "stylelint", "git add"],
+  "*.{js, jsx}": ["prettier --write", "stylelint", "git add"],
   "*.{json,md}": ["prettier --write", "git add"]
   },
   ignore: ["**/CHANGELOG.md"]

.prettierignore

 package.json
 .config/configstore/update-notifier-npm.json
+coverage/

.stylelintignore

 **/_build
 **/node_modules
 **/coverage
-packages/ui/styleguide
+docs/

.stylelintrc

 {
-  "extends": ["stylelint-config-pubsweet", "stylelint-config-prettier"]
+  "processors": ["stylelint-processor-styled-components"],
+  "extends": ["stylelint-config-recommended", "stylelint-config-styled-components"]
 }

CONTRIBUTING.md

@@ -17,9 +17,10 @@ For contributions made as discussions and suggestions, you can at any time open
 ## Branches
 
 We maintain master as the production branch and tag it with release names. If you wish to contribute to PubSweet then you need to make a branch and then issue a pull request following this procedure:
-create a user account on Coko GitLab : http://gitlab.coko.foundation
-Clone master with git clone git@gitlab.coko.foundation:pubsweet/pubsweet.git
-Create a new branch and work off that. Please name the branch which sensibly identifies the feature you are working on. You can push the branch to Coko Gitlab at anytime.
+
+1. Create a user account on Coko GitLab : http://gitlab.coko.foundation
+2. Clone master with git clone git@gitlab.coko.foundation:pubsweet/pubsweet.git
+3. Create a new branch and work off that. Please name the branch which sensibly identifies the feature you are working on. You can push the branch to Coko Gitlab at anytime.
 
 ## Getting your contributions merged
 

Dockerfile

-FROM pubsweet/pubsweet:base
+FROM node:12
 
-COPY package.json yarn.lock ./
-COPY lerna.json .eslintignore .eslintrc .prettierrc .prettierignore .stylelintignore .stylelintrc commitlint.config.js ./
-COPY packages packages
+ENV HOME "/home/pubsweet"
+RUN mkdir -p ${HOME}
+WORKDIR ${HOME}
 
-RUN [ "yarn", "config", "set", "workspaces-experimental", "true" ]
+COPY . .
 
-# We do a development install because react-styleguidist is a dev dependency
+RUN [ "yarn", "config", "set", "workspaces-experimental", "true" ]
 RUN [ "yarn", "install", "--frozen-lockfile" ]
 
 # Remove cache and offline mirror
-RUN [ "yarn", "cache", "clean"]
-RUN [ "rm", "-rf", "/npm-packages-offline-cache"]
+RUN [ "yarn", "cache", "clean" ]
+RUN [ "rm", "-rf", "/npm-packages-offline-cache" ]
 
+RUN [ "yarn", "build" ]
 ENV NODE_ENV "production"
 
-WORKDIR ${HOME}/packages/styleguide
-RUN [ "npm", "run", "styleguide:build" ]
-# Create file for kubernetes health checks
-RUN touch ./styleguide/health
-
 EXPOSE 3000
 
-WORKDIR ${HOME}
 CMD []

MAINTAINERS.md

+PubSweet consists of many software packages maintained by its community. Contributions are welcome from anyone, and discussed with the community as a whole before being accepted.
+
+Additionally, there is a group of people, that can accept merge requests and do releases of PubSweet - we call them... :drum: :drum:... :rocket: **"THE MAINTAINERS"** :rocket:
+
+Here they are in alphabetical order:
+
+- Andrei Cioromila @andrei.cioromila (Thinslices/Hindawi)
+- Audrey Hamelers @audrey (EBI)
+- Yannis Barlas @yannis (Coko)

README.md

 <div width="100%" align="center">
-  <img src="https://gitlab.coko.foundation/pubsweet/pubsweet/raw/master/assets/rgb-medium.jpg" width="300" />
-  <h2>The open toolkit for building publishing workflows</h2>
+  <img src="https://gitlab.coko.foundation/pubsweet/pubsweet/raw/master/assets/logo-pubsweet.png" width="300" />
+  <h2>PubSweet: The open toolkit for building publishing workflows</h2>
 </div>
 
 | [![MIT license](https://img.shields.io/badge/license-MIT-e51879.svg)](https://gitlab.coko.foundation/pubsweet/pubsweet/raw/master/LICENSE) [![mattermost](https://img.shields.io/badge/mattermost_chat-coko%2Fpubsweet-blue.svg)](https://mattermost.coko.foundation/coko/channels/pubsweet) [![Commitizen friendly](https://img.shields.io/badge/commitizen-friendly-brightgreen.svg)](http://commitizen.github.io/cz-cli/) |
 | :--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------: |
 
 
-# Contents
-
-<!-- TOC depthFrom:1 depthTo:6 withLinks:1 updateOnSave:0 orderedList:0 -->
-
-* [Overview](#overview)
-* [PubSweet packages](#pubsweet-packages)
-* [Wiki](#wiki)
-* [Support](#support)
-* [Credits](#credits)
-
-<!-- /TOC -->
-
 # Overview
 
 **PubSweet** allows you to build state-of-the-art publishing platforms.
 
 It's a modular and flexible framework consisting of a **server** and **client** that work together, **components** that can modify or extend the functionality of the server and/or client, and a **command-line tool** that helps manage PubSweet apps.
 
-## PubSweet packages (managed with Lerna)
-
-| package                                                                                                                                                                                                              | description                                                           |
-| :------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- | :-------------------------------------------------------------------- |
-| [![pubsweet-server](https://img.shields.io/badge/PubSweet-server-51c1bc.svg?style=flat&colorA=84509d) pubsweet-server](https://gitlab.coko.foundation/pubsweet/pubsweet/tree/master/packages/server)                 | an extensible RESTful and GraphQL API that runs on the server         |
-| [![pubsweet-client](https://img.shields.io/badge/PubSweet-client-51c1bc.svg?style=flat&colorA=84509d) pubsweet-client](https://gitlab.coko.foundation/pubsweet/pubsweet/tree/master/packages/client)                 | an extensible frontend React app that runs in the browser             |
-| [![pubsweet-components](https://img.shields.io/badge/PubSweet-components-51c1bc.svg?style=flat&colorA=84509d) pubsweet-components](https://gitlab.coko.foundation/pubsweet/pubsweet/tree/master/packages/components) | components for server and/or client                                   |
-| [![pubsweet-cli](https://img.shields.io/badge/PubSweet-CLI-51c1bc.svg?style=flat&colorA=84509d) pubsweet cli](https://gitlab.coko.foundation/pubsweet/pubsweet/tree/master/packages/cli)                             | a suite of command-line tools for building and managing your platform |
-| [@pubsweet/logger](https://gitlab.coko.foundation/pubsweet/pubsweet/tree/master/packages/logger)                                                                                                                     | logging utility                                                       |
-| [@pubsweet/db-manager](https://gitlab.coko.foundation/pubsweet/pubsweet/tree/master/packages/db-manager)                                                                                                             | utility for managing PubSweet databases                               |
-
-# Wiki
-
-The [PubSweet Wiki](https://gitlab.coko.foundation/pubsweet/pubsweet/wikis/home) contains all of the documentation for the PubSweet framework.
-
-The wiki answers most of the common questions around:
-
-* Setting up your local environment
-* Documentation of PubSweet components
-* Using PubSweet components
-* The PubSweet data model
-* Technical terms
-* Contributing
+# Documentation
 
-Additionally, we've collaboratively written (using Editoria, a PubSweet-based app), [a book about PubSweet](https://coko.foundation/books/).
+The [PubSweet website](http://pubsweet.coko.foundation) contains all of the documentation for the PubSweet framework. Please submit an issue or MR if you find a piece of information is missing!
 
 # Support
 
-* **If you have a general query about PubSweet**, or want to discuss anything with us, come and [chat to us in our Mattermost channel](https://mattermost.coko.foundation/coko/channels/pubsweet).
+- **If you have a general query about PubSweet**, or want to discuss anything with us, come and [chat to us in our Mattermost channel](https://mattermost.coko.foundation/coko/channels/pubsweet).
 
-* **Bug reports and feature requests** belong in the issues of this monorepo.
+- **Bug reports and feature requests** belong in the issues of this monorepo.
 
 # Projects using PubSweet
 
-* [Editoria](https://gitlab.coko.foundation/editoria/editoria) - a book production platform built for University of California Press
-* [Xpub](https://gitlab.coko.foundation/xpub/xpub) - Collabra, a journal publishing platform
-* [elife-xpub](https://github.com/elifesciences/elife-xpub/) - A journal publishing platform in collaboration with eLife
-* [Faraday](https://gitlab.coko.foundation/xpub/xpub-faraday) - A journal publishing platform in collaboration with Hindawi
-* [Micropubs](https://gitlab.coko.foundation/micropubs/wormbase) - A micropublications platform in collaboration with Wormbase
+- [Editoria](https://gitlab.coko.foundation/editoria/editoria) - a book production platform built for University of California Press
+- [elife-xpub](https://github.com/elifesciences/elife-xpub/) - A journal publishing platform in collaboration with eLife
+- [xpub-review](https://gitlab.com/hindawi/xpub/xpub-review) - A journal publishing platform in collaboration with Hindawi
+- [Micropubs](https://gitlab.coko.foundation/micropubs/wormbase) - A micropublications platform in collaboration with Wormbase
+- [Xpub](https://gitlab.coko.foundation/xpub/xpub) - Collabra, a journal publishing platform
 
 # Credits
 
 PubSweet is part of the [Collaborative Knowledge Foundation](https://coko.foundation) family.
 
-<a href="https://coko.foundation"><img src="https://gitlab.coko.foundation/pubsweet/pubsweet/raw/master/assets/COKO_logo.jpg" width="300" /></a>
+<a href="https://coko.foundation"><img src="https://gitlab.coko.foundation/pubsweet/pubsweet/raw/master/assets/COKO_logo.png" width="300" /></a>